PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_003807

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 268aa MW: 30320.4 Da PI: 8.7578

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_003807	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.3	3.4e-07	109	128	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r+ nL+ H+ DCAR_003807 109 FSCHICNKTFNRHNNLQMHM 128 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.55E-6	104	131	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-5	109	128	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.18	109	131	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	1.3E-4	109	128	No hit	No description
PROSITE profile	PS50157	10.824	109	136	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	111	131	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	156	188	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	230	193	213	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MELSDGSFTL DHNHTQLVDF FPKETRNFLE SLPSTILSSL QSEAPKPVMP DQDSYSSCHG 60 DKEDLNVTLH IGLAMSTSES SSRYSSHHQP ITKYWIPSPA QILVGFTNFS CHICNKTFNR 120 HNNLQMHMWG HGSQYRKGPE SLKGVQPRAM SGIPCYCCEE GCKNNLNHPR ARPLKDFRTL 180 QTHYKRKHGT KQFCCRKCGK CLAVKGDWRT HEKNCGKRWL CTCGSDFKHK RSLKDHIKAF 240 GISGHAPISP SLDGVEMNEG YHHSVFI*

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017237612.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-95	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A166II31	0.0	A0A166II31_DAUCS; Uncharacterized protein
STRING	XP_009761488.1	1e-116	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13264	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	2e-97	C2H2 family protein

Link Out ? help Back to Top
Phytozome	DCAR_003807

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]