PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003829
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 293aa    MW: 33226.9 Da    PI: 4.4616
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003829genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.8e-07178221755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ r RR++i ++ +eL +l+P       +K++ ae+ + A +YIk +q
  DCAR_003829 178 IAARVRRRKITEKTQELGKLIPGG-----QKMNTAEMFQAASKYIKFMQ 221
                  67799*****************86.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.252171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-10172235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-10175233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-8177224No hitNo description
PfamPF000108.5E-5178221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MALSYYYNWS TQLLDQHLRQ DHETTITTDC NDIFFEQDQL VSEDLLLPPE LLNFHDNFDT  60
CIDTLFTPNN HFLCSGENVD AYNALLPATV PLNIIPALEM AEEDACFGHF GKRSKIQENY  120
FFSPEMTFHD NYDMGPLLPE FVLPELPVPM PAVFNEGCND YEVKKAGNAG GKLSQQSIAA  180
RVRRRKITEK TQELGKLIPG GQKMNTAEMF QAASKYIKFM QAQIGLLQLM QEENDEGMQS  240
PELEPLVTSP LVQEKLYSAE KCLVPRDFVK SLIQKPQLQS NPQLIKDLIK LI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253416.10.0PREDICTED: transcription factor bHLH52-like
TrEMBLA0A162B8130.0A0A162B813_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-30bHLH family protein