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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | DCAR_003838 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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| Family | B3 | ||||||||
| Protein Properties | Length: 1024aa MW: 116146 Da PI: 9.5752 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 39.7 | 8.7e-13 | 168 | 249 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
++++ ++f e++++ k++ + ++ ++r+W+v++ + +s+++ +++ W +F+++n L++ D++vF+l++ s++ l v +fr+
DCAR_003838 168 PNVYITNTFKEAYKKWKNN--DKVILRVENRRWTVYC--SVNSNQCRFGRKWGKFARENSLNVDDVCVFELINPSRKLLQVLIFRE 249
4588999999999655433..445556688*******..88888999*************************98888899999986 PP
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| 2 | B3 | 35.5 | 1.8e-11 | 266 | 342 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
++p+kf + ++++ + ++l +sg +W++ l +k++++++l++GW eF+k + g +vF+++++s+f +v +f+
DCAR_003838 266 MIPRKFERLFEKN--LDNRIQLSVPSGSVWSIDL--EKQQDKVWLQNGWPEFAKFYSIGFGYLLVFEYQEDSKF--KVLIFDP 342
7999997666644..7779***************..********************************998999..9999985 PP
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| 3 | B3 | 44.5 | 2.8e-14 | 425 | 511 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f+ +tps+ s+ + + k+f e ++ k ++++++le g++W v ++ + +r+ ++ GW +F+++n Lk+gD++vF+l++ s+
DCAR_003838 425 FIVSMTPSHIKGSSGMHITKTFEEVYK-KWMKNVEVILEV-GGKTWPVFSYFNLSNDRCAFRHGWADFARDNSLKVGDVCVFELINPSK 511
77899*****************87775.345778899776.9*****98878999999*************************997544 PP
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| 4 | B3 | 46.7 | 5.8e-15 | 551 | 639 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
++ s + ++rl++p kf++++g + + le + g W+vkl ++++++++l++GW +F++ ++ g +vF+++g+s f +v + +k
DCAR_003838 551 MIVSTITPHSRLMIPTKFLTTCGDD--LADFIFLEAPAGSIWQVKL--ERSDSQVWLQNGWPDFAEHYSICFGHLLVFRYKGNSHF--HVIIMDK 639
5567777899************988..4457***************..**********************************9999..8888776 PP
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| 5 | B3 | 43.8 | 4.4e-14 | 728 | 801 | 1 | 75 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT-- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLk 75
ffk+ +++++ ++l++pk f+++h ++ ++l++++grsW vk++ r ++ + +t+GW++F++an L
DCAR_003838 728 FFKINMRPSYVDGRCLSVPKIFVTTHITRDHC--NVILQSSDGRSWPVKCTTsRSYRTAARFTSGWRNFAHANSLA 801
666666655555556***********544345..7***************884666666***************97 PP
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| 6 | B3 | 56.4 | 5.5e-18 | 911 | 1008 | 1 | 99 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
f+ +++p +v ++ + +++pk+f e++++ k + +l +gr W v+++ + +++ +++GW +F+++n Lk+gD++vF+l++ s++ l v
DCAR_003838 911 FIHAMKPIYVYENgSGVYIPKTFKEAYKKWKYQ--NQILLEAEGRIWPVTCSLYSHCNQCRIRQGWAQFARDNSLKAGDVCVFELINPSTKLLQVL 1004
77789999999997779********99755444..5677888********************************************9888889999 PP
EE-S CS
B3 96 vfrk 99
+fr+
DCAR_003838 1005 IFRA 1008
9997 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 6.47E-6 | 18 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 5.7E-5 | 19 | 56 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.6E-17 | 146 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.08E-16 | 147 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.16E-13 | 152 | 248 | No hit | No description |
| Pfam | PF02362 | 2.0E-11 | 154 | 249 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 5.1E-6 | 154 | 250 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 9.911 | 155 | 250 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 0.0017 | 253 | 343 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 4.71E-16 | 263 | 343 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 4.54E-12 | 266 | 341 | No hit | No description |
| Pfam | PF02362 | 2.4E-9 | 266 | 341 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.1E-15 | 266 | 343 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 11.885 | 267 | 343 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 3.7E-19 | 417 | 510 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 3.73E-21 | 420 | 515 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.86E-20 | 423 | 513 | No hit | No description |
| Pfam | PF02362 | 1.2E-12 | 425 | 512 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.632 | 425 | 520 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 4.8E-11 | 425 | 520 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 3.53E-20 | 545 | 640 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 7.2E-19 | 545 | 640 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 7.35E-13 | 546 | 636 | No hit | No description |
| PROSITE profile | PS50863 | 13.69 | 547 | 640 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 3.0E-13 | 548 | 640 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 7.4E-11 | 551 | 638 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50270 | 8.556 | 673 | 792 | No hit | No description |
| Gene3D | G3DSA:2.40.330.10 | 2.5E-16 | 721 | 803 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 5.89E-17 | 724 | 821 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 3.51E-14 | 727 | 812 | No hit | No description |
| Pfam | PF02362 | 1.0E-11 | 728 | 802 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 10.757 | 728 | 826 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 8.3E-6 | 729 | 814 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 2.3E-22 | 903 | 1009 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.67E-21 | 906 | 1009 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 5.39E-18 | 909 | 1007 | No hit | No description |
| Pfam | PF02362 | 5.1E-16 | 911 | 1008 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 2.9E-9 | 911 | 1009 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.478 | 912 | 1009 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1024 aa Download sequence Send to blast |
MCNHSLTDRI VIVMHMLQMI PKKFASIHGK NLDDKISLKV PGGSVWPIKL KRHKNKGDSK 60 FQVLVFDPSG LETDYPLTST TENRNVVRLG RAKKRVVDSD DSTSVDVVRP CKRTTASSSC 120 KAGEDGPKVK QEKAERNGVA LASAKAFKSK NPSFIHVMKS SNVVGAWPNV YITNTFKEAY 180 KKWKNNDKVI LRVENRRWTV YCSVNSNQCR FGRKWGKFAR ENSLNVDDVC VFELINPSRK 240 LLQVLIFREE ETSLQVDLWI HIYVQMIPRK FERLFEKNLD NRIQLSVPSG SVWSIDLEKQ 300 QDKVWLQNGW PEFAKFYSIG FGYLLVFEYQ EDSKFKVLIF DPSASEIDYP ANCSTTLEFV 360 KSTKVEKKRE NEFNISDDSD EISPRKRTRA SYSCIANSNG KSACNVKKDP ALAAAKDFKS 420 EKPYFIVSMT PSHIKGSSGM HITKTFEEVY KKWMKNVEVI LEVGGKTWPV FSYFNLSNDR 480 CAFRHGWADF ARDNSLKVGD VCVFELINPS KKLLKHSSPE HSDYEALEMG DIIQVPACMD 540 PLVKPRYFFK MIVSTITPHS RLMIPTKFLT TCGDDLADFI FLEAPAGSIW QVKLERSDSQ 600 VWLQNGWPDF AEHYSICFGH LLVFRYKGNS HFHVIIMDKS ATEVEYPLSA TSHSEETDHV 660 TGLGKGKEVA ADDIGRREDF TICLASSAQY TKTVLASAEA SHQVNQKALQ VTSEAEVSAK 720 AFRSENPFFK INMRPSYVDG RCLSVPKIFV TTHITRDHCN VILQSSDGRS WPVKCTTSRS 780 YRTAARFTSG WRNFAHANSL AGDSKFLVRI FDPSASEIDY PLATTKIPNS VKSRSKVKKT 840 VIDIDDTTSS EMIRPSKKIR ASSAPIAARN TGPKLQHKKA MENDEPAPAS KEDKDRALAS 900 AKAFRSKNPF FIHAMKPIYV YENGSGVYIP KTFKEAYKKW KYQNQILLEA EGRIWPVTCS 960 LYSHCNQCRI RQGWAQFARD NSLKAGDVCV FELINPSTKL LQVLIFRATK EAENLECLHH 1020 LKL* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4i1k_A | 2e-16 | 890 | 1010 | 28 | 144 | B3 domain-containing transcription factor VRN1 |
| 4i1k_B | 2e-16 | 890 | 1010 | 28 | 144 | B3 domain-containing transcription factor VRN1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017253430.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
| TrEMBL | A0A166IIZ5 | 0.0 | A0A166IIZ5_DAUCS; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA759 | 18 | 93 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G18990.1 | 9e-26 | B3 family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | DCAR_003838 |




