PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003838
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 1024aa    MW: 116146 Da    PI: 9.5752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003838genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.7e-131682491499
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   ++++ ++f e++++ k++  + ++   ++r+W+v++  + +s+++ +++ W +F+++n L++ D++vF+l++ s++ l v +fr+
  DCAR_003838 168 PNVYITNTFKEAYKKWKNN--DKVILRVENRRWTVYC--SVNSNQCRFGRKWGKFARENSLNVDDVCVFELINPSRKLLQVLIFRE 249
                  4588999999999655433..445556688*******..88888999*************************98888899999986 PP

2B335.51.8e-112663421799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++p+kf + ++++   +  ++l  +sg +W++ l  +k++++++l++GW eF+k   +  g  +vF+++++s+f  +v +f+ 
  DCAR_003838 266 MIPRKFERLFEKN--LDNRIQLSVPSGSVWSIDL--EKQQDKVWLQNGWPEFAKFYSIGFGYLLVFEYQEDSKF--KVLIFDP 342
                  7999997666644..7779***************..********************************998999..9999985 PP

3B344.52.8e-14425511189
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                  f+  +tps+   s+ + + k+f e ++ k  ++++++le   g++W v   ++ + +r+ ++ GW +F+++n Lk+gD++vF+l++ s+
  DCAR_003838 425 FIVSMTPSHIKGSSGMHITKTFEEVYK-KWMKNVEVILEV-GGKTWPVFSYFNLSNDRCAFRHGWADFARDNSLKVGDVCVFELINPSK 511
                  77899*****************87775.345778899776.9*****98878999999*************************997544 PP

4B346.75.8e-15551639599
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++ s  + ++rl++p kf++++g +      + le + g  W+vkl  ++++++++l++GW +F++   ++ g  +vF+++g+s f  +v + +k
  DCAR_003838 551 MIVSTITPHSRLMIPTKFLTTCGDD--LADFIFLEAPAGSIWQVKL--ERSDSQVWLQNGWPDFAEHYSICFGHLLVFRYKGNSHF--HVIIMDK 639
                  5567777899************988..4457***************..**********************************9999..8888776 PP

5B343.84.4e-14728801175
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT-- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLk 75 
                  ffk+ +++++   ++l++pk f+++h    ++   ++l++++grsW vk++  r ++ +  +t+GW++F++an L 
  DCAR_003838 728 FFKINMRPSYVDGRCLSVPKIFVTTHITRDHC--NVILQSSDGRSWPVKCTTsRSYRTAARFTSGWRNFAHANSLA 801
                  666666655555556***********544345..7***************884666666***************97 PP

6B356.45.5e-189111008199
                   EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3    1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95  
                   f+ +++p +v ++ + +++pk+f e++++ k +    +l   +gr W v+++   + +++ +++GW +F+++n Lk+gD++vF+l++ s++ l v 
  DCAR_003838  911 FIHAMKPIYVYENgSGVYIPKTFKEAYKKWKYQ--NQILLEAEGRIWPVTCSLYSHCNQCRIRQGWAQFARDNSLKAGDVCVFELINPSTKLLQVL 1004
                   77789999999997779********99755444..5677888********************************************9888889999 PP

                   EE-S CS
           B3   96 vfrk 99  
                   +fr+
  DCAR_003838 1005 IFRA 1008
                   9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-61876IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-51956IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-17146249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-16147248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-13152248No hitNo description
PfamPF023622.0E-11154249IPR003340B3 DNA binding domain
SMARTSM010195.1E-6154250IPR003340B3 DNA binding domain
PROSITE profilePS508639.911155250IPR003340B3 DNA binding domain
SMARTSM010190.0017253343IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-16263343IPR015300DNA-binding pseudobarrel domain
CDDcd100174.54E-12266341No hitNo description
PfamPF023622.4E-9266341IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15266343IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.885267343IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-19417510IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-21420515IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-20423513No hitNo description
PfamPF023621.2E-12425512IPR003340B3 DNA binding domain
PROSITE profilePS5086311.632425520IPR003340B3 DNA binding domain
SMARTSM010194.8E-11425520IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-20545640IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-19545640IPR015300DNA-binding pseudobarrel domain
CDDcd100177.35E-13546636No hitNo description
PROSITE profilePS5086313.69547640IPR003340B3 DNA binding domain
SMARTSM010193.0E-13548640IPR003340B3 DNA binding domain
PfamPF023627.4E-11551638IPR003340B3 DNA binding domain
PROSITE profilePS502708.556673792No hitNo description
Gene3DG3DSA:2.40.330.102.5E-16721803IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-17724821IPR015300DNA-binding pseudobarrel domain
CDDcd100173.51E-14727812No hitNo description
PfamPF023621.0E-11728802IPR003340B3 DNA binding domain
PROSITE profilePS5086310.757728826IPR003340B3 DNA binding domain
SMARTSM010198.3E-6729814IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-229031009IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-219061009IPR015300DNA-binding pseudobarrel domain
CDDcd100175.39E-189091007No hitNo description
PfamPF023625.1E-169111008IPR003340B3 DNA binding domain
SMARTSM010192.9E-99111009IPR003340B3 DNA binding domain
PROSITE profilePS5086312.4789121009IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MCNHSLTDRI VIVMHMLQMI PKKFASIHGK NLDDKISLKV PGGSVWPIKL KRHKNKGDSK  60
FQVLVFDPSG LETDYPLTST TENRNVVRLG RAKKRVVDSD DSTSVDVVRP CKRTTASSSC  120
KAGEDGPKVK QEKAERNGVA LASAKAFKSK NPSFIHVMKS SNVVGAWPNV YITNTFKEAY  180
KKWKNNDKVI LRVENRRWTV YCSVNSNQCR FGRKWGKFAR ENSLNVDDVC VFELINPSRK  240
LLQVLIFREE ETSLQVDLWI HIYVQMIPRK FERLFEKNLD NRIQLSVPSG SVWSIDLEKQ  300
QDKVWLQNGW PEFAKFYSIG FGYLLVFEYQ EDSKFKVLIF DPSASEIDYP ANCSTTLEFV  360
KSTKVEKKRE NEFNISDDSD EISPRKRTRA SYSCIANSNG KSACNVKKDP ALAAAKDFKS  420
EKPYFIVSMT PSHIKGSSGM HITKTFEEVY KKWMKNVEVI LEVGGKTWPV FSYFNLSNDR  480
CAFRHGWADF ARDNSLKVGD VCVFELINPS KKLLKHSSPE HSDYEALEMG DIIQVPACMD  540
PLVKPRYFFK MIVSTITPHS RLMIPTKFLT TCGDDLADFI FLEAPAGSIW QVKLERSDSQ  600
VWLQNGWPDF AEHYSICFGH LLVFRYKGNS HFHVIIMDKS ATEVEYPLSA TSHSEETDHV  660
TGLGKGKEVA ADDIGRREDF TICLASSAQY TKTVLASAEA SHQVNQKALQ VTSEAEVSAK  720
AFRSENPFFK INMRPSYVDG RCLSVPKIFV TTHITRDHCN VILQSSDGRS WPVKCTTSRS  780
YRTAARFTSG WRNFAHANSL AGDSKFLVRI FDPSASEIDY PLATTKIPNS VKSRSKVKKT  840
VIDIDDTTSS EMIRPSKKIR ASSAPIAARN TGPKLQHKKA MENDEPAPAS KEDKDRALAS  900
AKAFRSKNPF FIHAMKPIYV YENGSGVYIP KTFKEAYKKW KYQNQILLEA EGRIWPVTCS  960
LYSHCNQCRI RQGWAQFARD NSLKAGDVCV FELINPSTKL LQVLIFRATK EAENLECLHH  1020
LKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-16890101028144B3 domain-containing transcription factor VRN1
4i1k_B2e-16890101028144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253430.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A166IIZ50.0A0A166IIZ5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-26B3 family protein