PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_003855

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YA

Protein Properties

Length: 151aa MW: 16903.9 Da PI: 9.5201

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_003855	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.5	1.9e-32	56	112	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++I++RRq+Rak+e+e+k ksrkpylheSRh+hAlrR+Rg+gGrF DCAR_003855 56 EEPVFVNAKQYHGIMRRRQSRAKAESENKA-LKSRKPYLHESRHQHALRRARGNGGRF 112 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.9E-35	54	115	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.331	55	115	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.1E-27	57	112	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.6E-24	58	80	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	60	80	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.6E-24	89	112	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MGQAAYPYPD PYYRSIFAPY DTQPYPAQPY PAQPMVHLQL MGIQQAGVPL PSDAVEEPVF 60 VNAKQYHGIM RRRQSRAKAE SENKALKSRK PYLHESRHQH ALRRARGNGG RFLNAKKDEN 120 QQSEASSDRS QANINLNSDK IDVASSDSCC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	55	120	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM422775	2e-57	AM422775.1 Antirrhinum majus mRNA for YA6 (nf-YA gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017230574.1	1e-108	PREDICTED: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	4e-60	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A166IJK4	1e-107	A0A166IJK4_DAUCS; Uncharacterized protein
STRING	XP_008225593.1	8e-88	(Prunus mume)
STRING	EMJ13270	8e-88	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-58	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	DCAR_003855

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]