PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003871
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARR-B
Protein Properties Length: 193aa    MW: 21678.8 Da    PI: 6.2392
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003871genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.69.1e-21142190251
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                   r++W+ +LH+rFvea+  L G  +A Pk+ile+m+++gLt+e+v+SHLQ
  DCAR_003871 142 DRVVWSGDLHDRFVEALIVL-GFYNAKPKKILEVMNIPGLTRENVASHLQ 190
                  69******************.9**************************** PP
2Response_reg56.31.8e-19129622109
                   TCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  22 gyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                    +e+v++++++ +al  l+ k++D+++ D+ mp+m+G++l k+i++e  +lp+i++++ ++     e l+ Ga  f +Kp+ ++++ +
   DCAR_003871  12 AVENVTAVKHPYDALCALRLKTYDIVMSDVHMPNMNGIQLQKHINQEF-QLPVILISSDSQ--KQMEGLQNGAVYFMVKPVGIDDVKN 96 
                   5689****************************************9999.9*******7776..778****************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011021.411102IPR001789Signal transduction response regulator, receiver domain
SMARTSM004480.0037198IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-151296IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.08E-151499No hitNo description
Gene3DG3DSA:3.40.50.23007.3E-1915102No hitNo description
SuperFamilySSF521722.13E-1716103IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.601.7E-19140190IPR009057Homeodomain-like
SuperFamilySSF466892.51E-13140190IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-18143191IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MFGSSGEKSN PAVENVTAVK HPYDALCALR LKTYDIVMSD VHMPNMNGIQ LQKHINQEFQ  60
LPVILISSDS QKQMEGLQNG AVYFMVKPVG IDDVKNIWQF SVWWKSKINN STLPREINSH  120
SEEDLVRETA LSSDDIINAR SDRVVWSGDL HDRFVEALIV LGFYNAKPKK ILEVMNIPGL  180
TRENVASHLQ VS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253538.11e-120PREDICTED: two-component response regulator ARR14-like
TrEMBLA0A166IK651e-140A0A166IK65_DAUCS; Uncharacterized protein
STRINGEOY230878e-45(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-37response regulator 2