PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003983
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 173aa    MW: 18610.8 Da    PI: 9.4487
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003983genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188e-064264123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C +C+k+Fs+ + L  H++ H
  DCAR_003983 42 FPCRYCDKTFSTFMALGGHQKGH 64
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.56E-63968No hitNo description
PfamPF139121.8E-64166IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3054269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDAQKVQHSP SSNSPPRRNE IDAPALTQIP ENSPEPKTAK TFPCRYCDKT FSTFMALGGH  60
QKGHKRARGA HAGRAQTSLY RPYPATSRPN SGSDSMANKQ SYLSMESSSS STNTWRLLQE  120
FYAKIPVKSA PPSLNCVPPA ATALSLGVSS TPKTSEEVKE EDASGLDLDL KL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253813.11e-125PREDICTED: zinc finger protein 8-like
TrEMBLA0A166INU71e-124A0A166INU7_DAUCS; Uncharacterized protein