PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004053
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 213aa    MW: 23312 Da    PI: 9.2368
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004053genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-192170255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+tae Aa+a++aa++ +++
  DCAR_004053 21 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEAAARAYDAAARGFRN 70
                 6********.**********8...557**********************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-212179IPR016177DNA-binding domain
PfamPF008477.2E-132166IPR001471AP2/ERF domain
CDDcd000183.88E-182178No hitNo description
Gene3DG3DSA:3.30.730.104.1E-312178IPR001471AP2/ERF domain
PROSITE profilePS5103223.422178IPR001471AP2/ERF domain
SMARTSM003801.8E-342184IPR001471AP2/ERF domain
PRINTSPR003673.0E-112233IPR001471AP2/ERF domain
PRINTSPR003673.0E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAPKEKTAPP CKKQTNVDEV HYRGVRKRPW GRYAAEIRDP GKKTRVWLGT FDTAEAAARA  60
YDAAARGFRN NKAKTNFPTP DEIMNVSDFK KIDTSKKVGN EYDVKQSQSP TSTLESSSQE  120
RFLSLDLNVA ADGFGSGYGS GFGSPILYPF QIQPVQIFGF VPAAGYRSSD GSGFRVSSGS  180
QSDSDSSSVV DVNMNRRGIM IDLNELPLPE YF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-202178260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232556.11e-156PREDICTED: ethylene-responsive transcription factor 4
SwissprotQ9LW494e-37ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A166IR481e-155A0A166IR48_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-28erf domain protein 9