PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004113

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 240aa MW: 27373.9 Da PI: 7.4317

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004113	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.5	9.4e-36	37	96	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + + l+cprC+s+ntkfCyynny+ +qPr+fCkaC+r+WtkGG+lrnvPvGggr++++++ DCAR_004113 37 QPEPLNCPRCNSSNTKFCYYNNYNRTQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKRHK 96 56889************************************************8887775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	36	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.4E-31	40	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.475	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MKQVSDDDSQ VYNNWLPPSE SPKPAQSNKR SHQQLQQPEP LNCPRCNSSN TKFCYYNNYN 60 RTQPRHFCKA CKRHWTKGGT LRNVPVGGGR KNKRHKPSQP AATAATTNPP LQSSYQNINS 120 FHSQQPSFLS NDDSAFIYNS ESFMNHQPMQ FSFSGWNCEK NNRSLNLNNI ATSYQKLENM 180 DKSVINEAWE FEVPGIENNV NSSSVTELGS CSYWNWNEFD STVGDFSIPN WDETEDIKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017241899.1	1e-179	PREDICTED: dof zinc finger protein DOF2.2-like
TrEMBL	A0A166IT50	1e-177	A0A166IT50_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6171	20	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-29	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	DCAR_004113