PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004231

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

G2-like

Protein Properties

Length: 205aa MW: 22709.5 Da PI: 7.1278

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004231	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.1	2.9e-31	24	77	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrW++eLH++Fv ave+LGG+++AtPk il+lm+vkg+t++hvkSHLQ+YR+ DCAR_004231 24 PRLRWSEELHKSFVLAVERLGGEDRATPKMILQLMDVKGVTISHVKSHLQMYRS 77 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-30	20	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-16	21	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-24	23	78	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-6	25	76	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MMSSSQNYIV SATRIRPYVR SKNPRLRWSE ELHKSFVLAV ERLGGEDRAT PKMILQLMDV 60 KGVTISHVKS HLQMYRSMKH EQMIHAAEVE ARRQAAPGTN YFNYSDASDK KVANSMAENF 120 LTPPAWINMY EANWNESCAS EPAFHFNGES VRGFCGNGKE KMLLDTVAGD GGCSASSSNS 180 RGSDMSVTTR DADDISLELT LGFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	25	80	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	25	80	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-18	25	80	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-18	25	80	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-18	25	80	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-18	25	80	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	25	80	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	25	80	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	25	80	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	25	80	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	25	80	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	25	80	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017223744.1	1e-154	PREDICTED: transcription repressor KAN1-like
Refseq	XP_017223754.1	1e-154	PREDICTED: transcription repressor KAN1-like
TrEMBL	A0A166IWV0	1e-152	A0A166IWV0_DAUCS; Uncharacterized protein
STRING	XP_009803423.1	1e-43	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7450	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-29	G2-like family protein

Link Out ? help Back to Top
Phytozome	DCAR_004231