PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004233

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

WRKY

Protein Properties

Length: 568aa MW: 61360.1 Da PI: 6.9857

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004233	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.7	1.5e-30	326	384	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ DCAR_004233 326 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGTHNHP 384 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.7E-33	310	386	IPR003657	WRKY domain
SuperFamily	SSF118290	9.81E-28	318	386	IPR003657	WRKY domain
PROSITE profile	PS50811	29.402	320	386	IPR003657	WRKY domain
SMART	SM00774	2.3E-36	325	385	IPR003657	WRKY domain
Pfam	PF03106	1.7E-26	327	384	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080169	Biological Process	cellular response to boron-containing substance deprivation
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MDRGWGLTLD NCDQSAGFFL NNNKPSSAGF CLTPRRPNIS VNMFSMNNTG KDSPASSPSG 60 DNRKAVPGEL DFFASKPTNY DHHDNSVNYP VMNSSSIVVK QEKSHGEASQ MDVNTGLHLL 120 TANAGSDQSM VDDGVSSNVV DKRAKNELVQ IQSELERMNI ENQRLRGMLS QVTNNYAALQ 180 MHLATIMEQQ NARAGRTQEH DQIAEEKLEE KTDDRSGDQG QIVPRQFLDL GPSNQAHSSS 240 EERTQSESGI NNVELSHNGN RINSMGKRLG RDDSPESESW NPNKTPKLAA AAASNSNSKA 300 IEQATEATMR KARVSVRARS EAPMITDGCQ WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR 360 KQVQRCAEDR TILITTYEGT HNHPLPPAAM AMASTTSAAA NMLLSGSMSS ADGILNPNIL 420 ARAILPVSSS SMATISASAP FPTVTLDLTH SPNPLQYQRP PSQFQLPFQA PQSFVGLPPT 480 PQIYGHPIHN QSKFSGLHVS SQDMESSQAH QAPPQFHQAQ PQTSFADTLS AATAAITADP 540 NFTAALAAAI SSIMGGNSSH QNNNNNQ*

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MDRGWGLTLD NCDQSAGFFL NNNKPSSAGF CLTPRRPNIS VNMFSMNNTG KDSPASSPSG  60
DNRKAVPGEL DFFASKPTNY DHHDNSVNYP VMNSSSIVVK QEKSHGEASQ MDVNTGLHLL  120
TANAGSDQSM VDDGVSSNVV DKRAKNELVQ IQSELERMNI ENQRLRGMLS QVTNNYAALQ  180
MHLATIMEQQ NARAGRTQEH DQIAEEKLEE KTDDRSGDQG QIVPRQFLDL GPSNQAHSSS  240
EERTQSESGI NNVELSHNGN RINSMGKRLG RDDSPESESW NPNKTPKLAA AAASNSNSKA  300
IEQATEATMR KARVSVRARS EAPMITDGCQ WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR  360
KQVQRCAEDR TILITTYEGT HNHPLPPAAM AMASTTSAAA NMLLSGSMSS ADGILNPNIL  420
ARAILPVSSS SMATISASAP FPTVTLDLTH SPNPLQYQRP PSQFQLPFQA PQSFVGLPPT  480
PQIYGHPIHN QSKFSGLHVS SQDMESSQAH QAPPQFHQAQ PQTSFADTLS AATAAITADP  540
NFTAALAAAI SSIMGGNSSH QNNNNNQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-22	312	388	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00209	DAP	Transfer from AT1G62300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017230730.1	0.0	PREDICTED: probable WRKY transcription factor 31
Swissprot	Q9C519	1e-155	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	A0A166IWY5	0.0	A0A166IWY5_DAUCS; Uncharacterized protein
STRING	EOY28756	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA945	24	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-130	WRKY family protein

Link Out ? help Back to Top
Phytozome	DCAR_004233

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]