PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004286
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 341aa    MW: 37306.9 Da    PI: 5.1624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004286genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l ++++++G + +W++ ++  g++R++k+c++rw +yl
      DCAR_004286 14 KGPWTPEEDQILMNYIHKHGLRgSWTALPKQAGLNRCGKSCRLRWINYL 62
                     79*********************************************97 PP
2Myb_DNA-binding46.87.1e-1568112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +T eE++ +++++  lG++ W+ Ia+ ++ gRt++ +k++w+++
      DCAR_004286  68 RGGFTDEEEQMIINLHSALGNR-WSQIAAQLP-GRTDNGIKNYWNTH 112
                      788*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.608962IPR017930Myb domain
SuperFamilySSF466894.39E-2911109IPR009057Homeodomain-like
SMARTSM007177.5E-131364IPR001005SANT/Myb domain
PfamPF002491.7E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-251569IPR009057Homeodomain-like
CDDcd001672.03E-101662No hitNo description
PROSITE profilePS5129424.6963117IPR017930Myb domain
SMARTSM007175.8E-1467115IPR001005SANT/Myb domain
PfamPF002493.0E-1368112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2670118IPR009057Homeodomain-like
CDDcd001671.25E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRAPGCTGE GLKKGPWTPE EDQILMNYIH KHGLRGSWTA LPKQAGLNRC GKSCRLRWIN  60
YLSPDIKRGG FTDEEEQMII NLHSALGNRW SQIAAQLPGR TDNGIKNYWN THIKKKLVSS  120
GIDPKTHEPI APNDLNNFLV NFSHSLSTSN LTNLMMMNSV DSPALAALRS LVPQPEPTTQ  180
LLQNLWQIIN TANPILLPNT IQENNLLNYS AYSSQGNVLV NGTDAAYDQD SSIFQNMHAG  240
AQCSGKDFGN VGSGLRPDVL LDDAVGKSSI FPQKEDMLPA LVSASSTDEP CGVKQMMNQT  300
SVQAETLPAA SSSSAFDTWE KLLNEGDGED YFYRDLINDP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-32121175108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254441.10.0PREDICTED: transcription factor MYB39
TrEMBLA0A166IYK20.0A0A166IYK2_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.15e-70myb domain protein 107