PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004337
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 609aa    MW: 70303.2 Da    PI: 8.8325
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004337genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08403442345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+eE e l++  k++G++ Wk+ a+++   R + q+k+ ++
      DCAR_004337 403 EWTEEEKEMLLEQYKKHGNN-WKLMAKEFK--RHRLQVKDTYR 442
                      6*****************99.********7..78888887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.67323396IPR017877Myb-like domain
SMARTSM007174.5E-4327398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-6327391IPR009057Homeodomain-like
PROSITE profilePS5129311.531399449IPR017884SANT domain
SMARTSM007175.1E-6400447IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-8402445IPR009057Homeodomain-like
SuperFamilySSF466898.33E-9402457IPR009057Homeodomain-like
CDDcd001672.67E-5403445No hitNo description
PfamPF139216.4E-14404461No hitNo description
Gene3DG3DSA:1.10.10.606.5E-6446515IPR009057Homeodomain-like
SMARTSM007172.2449515IPR001005SANT/Myb domain
PROSITE profilePS500907.294515568IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MSVWVGESDV VGKSGRKGKR SQKIEKGGEE EVRDRPDVEE GGIVKSGKKG KRSKKKEMDG  60
VEEEPDCMDV EEDGIENSRK KGKKSKNKKM DGVGEVTDCM DVEEDGIGKS RKKGKKSKEK  120
DGAEEMNDQT NVENDRNLES TVENKKKKNK GNDMVAGGES MTDPQDKEYK VEKRKKKKKT  180
KTFENQDALN KKTETEAKER NNIAGNVEKK KKKRKRTVEE EDDNDKGQTN GCYGEDHVNS  240
LPDDNGMVTI GKVKMMEKKK KRQRKNEEIT GKDGLLSKAK DNETTNVSGK DKTESENKDP  300
ENPKSKVKKK VRFSNDLEVF PSNSLVQGKR FTPEEDEKLR AAVKEYIQSH CLGEKGVEMV  360
MNCISHRQVR NCWNEINKAL PYRPKSAIYC RAHTLFERGE THEWTEEEKE MLLEQYKKHG  420
NNWKLMAKEF KRHRLQVKDT YRRIKRERNR GHWSQEEYQT LFDNVNIDLR AKLDEEKKSK  480
HGMLRDNICW TAISDKLSTR ADSLCCMKWY NQLTSPMVAQ GIWADSDDYR LLDALFNLDA  540
CCIEDVDWDD LMDHRSGDVC RKRWDQMVLH IGLHGVKSFS EQVEVLAKRY RPELTEAREA  600
WDSKPLVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214KKKKRK
2209215KKKKRKR
3211216KKRKRT
4258263KKKRQR
5305311KVKKKVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229444.10.0PREDICTED: transcription termination factor 1-like
TrEMBLA0A166J0B80.0A0A166J0B8_DAUCS; Uncharacterized protein
STRINGXP_009605412.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-109MYB_related family protein