PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004413

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 240aa MW: 26728 Da PI: 9.1869

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004413	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113.8	1.2e-35	13	113	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkCa++Cvlap fp +++++f nvhklFG++n+++++k+++ ++r da++s+v eA ra dP Ga++++++lq++++++kael+l++ DCAR_004413 13 ACAACKHQRRKCAPECVLAPFFPPHRQAEFLNVHKLFGVRNIMNTVKKVEMSRRGDAVRSMVHEAYFRAVDPAGGAYRILSHLQHRYNHMKAELDLVR 110 7************************************************************************************************9 PP DUF260 99 eel 101 ++l DCAR_004413 111 QQL 113 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.885	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-34	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MTGPAGGSSV SQACAACKHQ RRKCAPECVL APFFPPHRQA EFLNVHKLFG VRNIMNTVKK 60 VEMSRRGDAV RSMVHEAYFR AVDPAGGAYR ILSHLQHRYN HMKAELDLVR QQLAIFRSVQ 120 IDGIGSEHMQ HPPLNYSNFG RKESAEAINQ TDDITSPRIN ILRGDIIKKE GSSSNRDKKT 180 MRLEKKGSAS NLDNGTFESA PYDGNGNTKI DNIDENHSSS RSHENETNSL EDVKLNVRD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-23	2	124	4	122	LOB family transfactor Ramosa2.1
5ly0_B	1e-23	2	124	4	122	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254962.1	1e-180	PREDICTED: LOB domain-containing protein 7-like
Refseq	XP_017254973.1	1e-180	PREDICTED: LOB domain-containing protein 7-like
TrEMBL	A0A166J3L4	1e-179	A0A166J3L4_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17834	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	1e-33	LOB domain-containing protein 7

Link Out ? help Back to Top
Phytozome	DCAR_004413