PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004426
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 184aa    MW: 20233.8 Da    PI: 10.1485
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004426genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.7e-185891134
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                 Cs C+tt TplWR gp+g+k+LCnaCG++ rk +
  DCAR_004426 58 CSDCNTTRTPLWRGGPRGPKSLCNACGIRRRKAR 91
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.8E-1752103IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.28E-1355101No hitNo description
Gene3DG3DSA:3.30.50.107.1E-155691IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.2155688IPR000679Zinc finger, GATA-type
CDDcd002028.35E-125789No hitNo description
PROSITE patternPS0034405883IPR000679Zinc finger, GATA-type
PfamPF003202.9E-155891IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MVDHENISTS TEGDGSMRWM SSKMRVKRKI LPSSNNHSDQ INFSDHGNSS TDVVVRVCSD  60
CNTTRTPLWR GGPRGPKSLC NACGIRRRKA RKAIALAAHN SIESVSKMDQ HSSTRPSKFH  120
KGKKLHTTYH DVTHSRQTTG NSKLSFEDFA MSLVNKKSAE LFPGDEEEAA ILLMTLSCSL  180
ISG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221410.11e-134PREDICTED: putative GATA transcription factor 22
TrEMBLA0A166J3Y71e-133A0A166J3Y7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-26cytokinin-responsive gata factor 1