PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004454
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 228aa    MW: 25148.6 Da    PI: 5.5882
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004454genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-143375246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g++T+eEd +++++   lG++ W+ Ia+ ++ gRt++++k++w++
      DCAR_004454 33 GAFTPEEDGIIYNLYGILGSR-WSVIAASLP-GRTDNDVKNHWNT 75
                     89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.21E-221283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-111238IPR009057Homeodomain-like
PROSITE profilePS500904.0771326IPR017877Myb-like domain
PROSITE profilePS5129422.8932781IPR017930Myb domain
SMARTSM007176.5E-123179IPR001005SANT/Myb domain
PfamPF002491.5E-123375IPR001005SANT/Myb domain
CDDcd001677.61E-103477No hitNo description
Gene3DG3DSA:1.10.10.608.7E-183978IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRAPCCDKS LKRCGKSCRL RWLNYLRPDI KHGAFTPEED GIIYNLYGIL GSRWSVIAAS  60
LPGRTDNDVK NHWNTKLKKK LQATKDSYFA AIHQAPQSSN STSSTNHNLN PNVEGNYDLG  120
FSNIYQGNCF LQEEPSNAGV MHYTQTGNNV QEYSSVSDSS TAVDNNASEF LMDFGSGFGY  180
DQMMSAGIWS NDQGQETLGE ALINLPSNSY ANSTVCQNVN DQFYGNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2298135108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251468.11e-163PREDICTED: transcription factor RAX2-like isoform X2
TrEMBLA0A166J5401e-170A0A166J540_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-39MYB family protein