PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004549

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 369aa MW: 40211.3 Da PI: 5.7033

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004549	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	53.9	4e-17	189	244	3	61
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++kr +r+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN++L k+l + +++ + + DCAR_004549 189 DVKRIKRMVSNRESARRSRRRKQAHLADLEQQVDQLCGENSTLFKNLTNANQQFK---D 244 68******************************************66666555544...4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.5E-12	183	243	No hit	No description
SMART	SM00338	2.6E-16	187	248	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.634	189	243	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.0E-15	190	243	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.04E-11	190	241	No hit	No description
PROSITE pattern	PS00036	0	194	209	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MNRVSSEIDL EDIFKHSISD EVAGTDDHKN VKIRRMSRGG FADIFKHSIS DEVAGTDDHK 60 NVKIRRMSRG GFADSSDAGG LFRVDELADL PSFPFPNQEI MNGFSSCTEV TGAPLWSQSY 120 STPKHSCVTA TMDSQSSICA GSPTSATNYL PKSGDNQAVG VTSGSSHDLS DDDDLDTEAG 180 PCEQSDQVDV KRIKRMVSNR ESARRSRRRK QAHLADLEQQ VDQLCGENST LFKNLTNANQ 240 QFKDANMNNR VLKSDVEALR AKVKLAEDMV TRGSLTSSIS NLLQNHLNTP HSFGTHNMDR 300 VGNVSPTITV CGDNSSYHGL TGSAQTSTME HDNVEHFNGI VDNGIMNEAV SCASEIWPWG 360 PHVPTMSK*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MNRVSSEIDL EDIFKHSISD EVAGTDDHKN VKIRRMSRGG FADIFKHSIS DEVAGTDDHK  60
NVKIRRMSRG GFADSSDAGG LFRVDELADL PSFPFPNQEI MNGFSSCTEV TGAPLWSQSY  120
STPKHSCVTA TMDSQSSICA GSPTSATNYL PKSGDNQAVG VTSGSSHDLS DDDDLDTEAG  180
PCEQSDQVDV KRIKRMVSNR ESARRSRRRK QAHLADLEQQ VDQLCGENST LFKNLTNANQ  240
QFKDANMNNR VLKSDVEALR AKVKLAEDMV TRGSLTSSIS NLLQNHLNTP HSFGTHNMDR  300
VGNVSPTITV CGDNSSYHGL TGSAQTSTME HDNVEHFNGI VDNGIMNEAV SCASEIWPWG  360
PHVPTMSK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	210	RRSRRRKQ
2	205	210	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by glucose. {ECO:0000269\|PubMed:18841482}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017236158.1	0.0	PREDICTED: basic leucine zipper 9-like isoform X1
Swissprot	Q9FUD3	5e-65	BZIP9_ARATH; Basic leucine zipper 9
TrEMBL	A0A162BA88	0.0	A0A162BA88_DAUCS; Uncharacterized protein
STRING	VIT_04s0008g02750.t01	1e-100	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8139	22	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	4e-50	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	DCAR_004549

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ortiz-Espín A, et al. Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions. J. Exp. Bot., 2017. 68(5): p. 1025-1038 [PMID:28184497] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]