PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004701
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 1287aa    MW: 144776 Da    PI: 5.5388
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004701genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.3e-1511131203199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96  
                   f+k ++ps+v    +l +pk+f + h  +k  + t++l de+  + e k+ ++k++    l+ GW++F   ++L+e+D++vF+l+++ +f  +v +
  DCAR_004701 1113 FVKNMLPSHVAGGFWLGIPKNFSDMHL-PK-HDETVVLIDETELEHETKYFFEKNG----LGVGWRGFSITHKLQENDVLVFHLIQECKF--KVYI 1200
                   89*********************8884.33.4459***************999999....9*************************9999..8888 PP

                   E-S CS
           B3   97 frk 99  
                   +r+
  DCAR_004701 1201 VRA 1203
                   775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484523.11E-25135299IPR011990Tetratricopeptide-like helical domain
SMARTSM003860.59158190IPR003107HAT (Half-A-TPR) repeat
SMARTSM003861.1E-5207242IPR003107HAT (Half-A-TPR) repeat
SuperFamilySSF484521.63E-10334494IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.102.2E-4344458IPR011990Tetratricopeptide-like helical domain
SMARTSM003862.2E-5390422IPR003107HAT (Half-A-TPR) repeat
SMARTSM00386120443481IPR003107HAT (Half-A-TPR) repeat
SuperFamilySSF504944.31E-16743912IPR009003Peptidase S1, PA clan
PfamPF133657.0E-13755904No hitNo description
Gene3DG3DSA:2.40.10.103.5E-8832925No hitNo description
Gene3DG3DSA:2.40.330.101.2E-1711061204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2111071204IPR015300DNA-binding pseudobarrel domain
CDDcd100175.89E-2311111202No hitNo description
PfamPF023621.1E-1111131203IPR003340B3 DNA binding domain
SMARTSM010197.5E-2011131204IPR003340B3 DNA binding domain
PROSITE profilePS5086310.5611131204IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1287 aa     Download sequence    Send to blast
MGDSETVVTQ TTSVMAYTST EYASTDNYNE NAASDAVTSD AGVAGNVPSK ISAGSGEMKV  60
LTDVMVTDNT SEHTQNPTDE NGNQNLAKEE VPTKQMMLVA NSANVGENGT IAVANDFMSD  120
APALSAEEER LWSIVRANSL EFDAWTALIE ETERVAEGHI SKVRKVYDAF LAEFPLCYGY  180
WKKAVQGVTY SVDMWLHYCV FAINTYGDPD TVRRLFERGL LYVGSDFLSY TMWDKYIEYE  240
YTKQEWSRLA MIYTRILENP NKHLDRYFTR YNSYYSFREL VAQRPLSELR TAEETAAAAA  300
VGTTVQEIEE EVHPNAVESP KPVSAGITEA EELEKYITIR EEMYNKAKEF QSKIIGFERA  360
IKRPYFHVRP LNPVELANWN NYLDFVEAED DFQKVVKLYE RCLIDCANYP KYWIRYILHM  420
EARGSTDLAE NALGHATQVF VKGKAEDACS LYEQAVAIEK GKEHSQTLPQ LFAQYTRFVY  480
LAVIHLESIQ STPKQIEFLD SLINKFNAPN PDNPCAASFI DREELSSIFL EAEDRHSELF  540
FVHKSTSESK IRHADDILQS DKAKLAKSGY SSSPSVMGAY QSTKNQWPAG YGAQPQAWPQ  600
ATQAQAQNWT PAYTQAAYGG AYGNAYAQPQ VQTSVPQAAA ATAYGAYPPA YTVQAQQTYV  660
QAATPAPLAP GSSTATCCCC CPSILWHLLL LSQLMFHTIL QFVAQIVCHW GMMEQQQQQQ  720
MPTVFDDHII RGFEQEYRKA VAKVFIRNHG DKGWTGFIVS LSPTVVITVA HAVGSFPVHQ  780
VFSEDQFYLK FYDDPAEYKA RALKCSFKSD LLMLHCELRP SAVSFFEFAD HTSPLLSSTS  840
LLCISHPAQR DWVTLRGTVC RVPFLMGENE NYDHNMQLFD HDAQCFPGSS GAPITDLRGR  900
VIGMNFSEYT IKEHCFCVPN NAKETNLSTY QDGRVVPHQI KELTFLPCNV KQGITLQYIA  960
QTIRSFFQDE GFNDVDMNLN NYVRRSAIKY IMKEAKRKNQ GKQPSQTPQG KRPREQRPAE  1020
ETTEESNVFN PCLSISEGHG ETCLGDIKKC RKSEQIEAPL DVEVVSFNLD MSIASHEPKV  1080
TTRVGHKFDQ KTFSLMKQAL EIQAKLAPKF PSFVKNMLPS HVAGGFWLGI PKNFSDMHLP  1140
KHDETVVLID ETELEHETKY FFEKNGLGVG WRGFSITHKL QENDVLVFHL IQECKFKVYI  1200
VRANALTGSD GSACVEEMNC DHGEKDLKIT VMAGEEHLEH YSSIHCGQKK DKQMTLSSDL  1260
KGAMKCKILE EEEAGGTMGK AQGIIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g70_A2e-4412742183401Pre-mRNA-processing factor 39
6g70_B2e-4412742183401Pre-mRNA-processing factor 39
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A166JDD60.0A0A166JDD6_DAUCS; Uncharacterized protein
STRINGEMJ009060.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-34B3 family protein