PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004769
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 146aa    MW: 16803.1 Da    PI: 12.025
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004769genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.4e-0583127754
                  HHHHHHHHHHHHHH..HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsaf..eeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r rrRR  iN+     eLre++P       + l+  + L ++ +YIk L
  DCAR_004769  83 RRRRRRRCSINETCwtGELREIVPGG-----EDLDTRSLLDETAHYIKCL 127
                  578*********8888********95.....5799999999999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-784139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-586136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MNPASSNPRN YNNSSSNIRR RFTYRFLRTL KQVNSITAGR SSSSWSSRRR RSLEIKHAAN  60
MCMAATVGGR RAWSRAMLSK IRRRRRRRRC SINETCWTGE LREIVPGGED LDTRSLLDET  120
AHYIKCLTTQ VQVMNDILRL YSSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18188RRRRRRRR
28288RRRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237108.11e-101PREDICTED: transcription factor IBH1
TrEMBLA0A162BAR11e-100A0A162BAR1_DAUCS; Uncharacterized protein
STRINGXP_009780651.11e-29(Nicotiana sylvestris)
STRINGPGSC0003DMT4000141797e-30(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1175944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-07bHLH family protein