PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004791

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Protein Properties

Length: 326aa MW: 37265.3 Da PI: 9.8547

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004791	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59	8.4e-19	138	229	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v + +l lp f+e+h k+ ++++++ledesg ++e +i ++++ l++GW+ F+ +++L++gD +vF+l++ ++f +v ++r DCAR_004791 138 FIKSMVRSHVYSCFWLGLPTWFCEDHLPKSDGNTEIVLEDESGAEYEAVYISKRTG----LSGGWRAFALDHKLDDGDALVFELTEPTRF--KVYIVR 229 89**********************55556889************544444....*********************9765666..777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-20	131	230	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.85E-23	132	229	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.50E-26	136	229	No hit	No description
Pfam	PF02362	1.3E-16	138	229	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.492	138	231	IPR003340	B3 DNA binding domain
SMART	SM01019	2.2E-21	138	231	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MTSNNSNTNT YEEARKQRLL ENKKRIEELG ILKISKSLSD ITKSGKPQRR QPKPRATSIS 60 ILEPRRSSRA RNIVSSYRDD IGVELPLMRK RSKFNSSWTS YLARPVDEVK SSTLEERNAA 120 MKSAEKIQCS QQSKFPSFIK SMVRSHVYSC FWLGLPTWFC EDHLPKSDGN TEIVLEDESG 180 AEYEAVYISK RTGLSGGWRA FALDHKLDDG DALVFELTEP TRFKVYIVRA CDDPGKEEML 240 EVTEEEKISK EVPKEIMAKT NRKTESKKGS NSVLVSGRKW KCDESSLEND NTLEIREELK 300 SLKEIKAEDK KKPIRVSSRK RSSRQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017243638.1	0.0	PREDICTED: putative B3 domain-containing protein At5g58280
Refseq	XP_017243645.1	0.0	PREDICTED: putative B3 domain-containing protein At5g58280
Swissprot	Q9FHB2	2e-65	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	A0A166JGC6	0.0	A0A166JGC6_DAUCS; Uncharacterized protein
STRING	PGSC0003DMT400053199	1e-107	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12510	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-67	B3 family protein

Link Out ? help Back to Top
Phytozome	DCAR_004791

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]