PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004956

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 138aa MW: 14858.9 Da PI: 5.0054

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004956	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	36.1	1.8e-11	30	92	1	63
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvy 63 +C aCk r C+++C+++p fpa+ + + lF + +l+l++a ++ e + ++ ++ DCAR_004956 30 KCGACKGASRVCKTECPFRPFFPADTADMAHLISSLFHKKGILRLMNACKTAEEVTSCRTRLF 92 5***********************************************999888777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.618	29	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-9	30	92	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MTTDTTGADL TDPDNEEEEE EIPAAVAVDK CGACKGASRV CKTECPFRPF FPADTADMAH 60 LISSLFHKKG ILRLMNACKT AEEVTSCRTR LFNVAVSLIN GTARTHEAEI SELKELVKTQ 120 AASIGVQSES VRKMLPN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017236935.1	3e-97	PREDICTED: uncharacterized protein LOC108210167
TrEMBL	A0A166CMY4	4e-96	A0A166CMY4_DAUCS; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	DCAR_004956