PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004997
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 261aa    MW: 29500.3 Da    PI: 5.6928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004997genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-17124174255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr ++ +g+++AeIrdp   + +  r +lg++++  +Aaka+++a+ +l+g
  DCAR_004997 124 HYRGVRKRP-WGKFAAEIRDP---NrRGSRLWLGTYDSLVDAAKAYDRAAYNLRG 174
                  7********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-29123182IPR001471AP2/ERF domain
PROSITE profilePS5103223.657124182IPR001471AP2/ERF domain
PfamPF008474.7E-12124174IPR001471AP2/ERF domain
SMARTSM003806.0E-34124188IPR001471AP2/ERF domain
CDDcd000181.06E-26124182No hitNo description
SuperFamilySSF541713.53E-21124184IPR016177DNA-binding domain
PRINTSPR003677.8E-13125136IPR001471AP2/ERF domain
PRINTSPR003677.8E-13164184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MASDAQVLDF IRQHLLDEFS PEENFLNYFN DHHDVVHCPR SSSSSSSSSS SSSSSSETLI  60
SDYFTRDKQN ETKILRSPEL LNFSESMQKP EKSTEKDLPR QNKFDLTSST TQNSKTSAEE  120
ERRHYRGVRK RPWGKFAAEI RDPNRRGSRL WLGTYDSLVD AAKAYDRAAY NLRGRKAILN  180
FPLDVVNSNN VGTTEDGGRK RAREAIDVED YSTVMPNSKV SSQSMVADEN ESDHLSGPKG  240
DMSCLWEDQI NFSNFPPMSF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-27123185163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234561.10.0PREDICTED: ethylene-responsive transcription factor ERF106-like
TrEMBLA0A166CP270.0A0A166CP27_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-38ethylene responsive element binding factor 5