PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005143
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 270aa    MW: 30062.9 Da    PI: 4.8189
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005143genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.3e-3075133259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver++ dp+++ +tY+ eHnh+
  DCAR_005143  75 SDSWAWRKYGQKPIKGSPYPRAYYRCSSSkGCLARKQVERNRADPTMLMVTYSCEHNHP 133
                  69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3071135IPR003657WRKY domain
SuperFamilySSF1182901.15E-2572135IPR003657WRKY domain
SMARTSM007741.4E-3474134IPR003657WRKY domain
PROSITE profilePS5081131.78975135IPR003657WRKY domain
PfamPF031064.9E-2576133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDGRINPFAR EQDDYDYSPD YSEDSPPSGL FSDSKMASTS SPRKSRRGLQ KRVVSVPIKD  60
VEGSRLKGEI STPPSDSWAW RKYGQKPIKG SPYPRAYYRC SSSKGCLARK QVERNRADPT  120
MLMVTYSCEH NHPWPASKNN QNRNRNQSEN RTQNLDNNPV STATTTPVSI SISSPNVTTS  180
NSDDDQISPN FVMDEEFTNF DSEFGWFTNF ETTNSSTLLE SPTSARDGIR DADIATIFST  240
KEGDESFFAD LEELPECSLV FGRGVIGVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-1951135679Disease resistance protein RRS1
5w3x_D2e-1951135679Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233971.10.0PREDICTED: probable WRKY transcription factor 65
TrEMBLA0A166CTB30.0A0A166CTB3_DAUCS; Uncharacterized protein
STRINGXP_009595576.14e-95(Nicotiana tomentosiformis)
STRINGPGSC0003DMT4000732673e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64752333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-60WRKY DNA-binding protein 65