PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005305
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 217aa    MW: 24806.6 Da    PI: 4.5719
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005305genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-16870148
                     TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +lv +v+++G +                 W++Iar+++ gRt++++k++w++y+
      DCAR_005305  8 KGPWTEHEDVQLVFYVNLFGDRrwdfiakvsglkvagdKWSRIARKLP-GRTDNEIKNYWRTYM 70
                     79**********************************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.497374IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-7336IPR009057Homeodomain-like
SuperFamilySSF466897.76E-14666IPR009057Homeodomain-like
SMARTSM007171.4E-13772IPR001005SANT/Myb domain
PfamPF002491.8E-5837IPR001005SANT/Myb domain
CDDcd001671.19E-91070No hitNo description
Gene3DG3DSA:1.10.10.601.7E-114373IPR009057Homeodomain-like
PfamPF002494.5E-84469IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVQEEIRKGP WTEHEDVQLV FYVNLFGDRR WDFIAKVSGL KVAGDKWSRI ARKLPGRTDN  60
EIKNYWRTYM RKESQEKKRS MSPSPSHSNC SSSISSASPS LAADSQPIID TRERNFYDSR  120
GLDIYAANEN KSSKIHDCDG EEGYSMDEIW NDIELSPEES IKPVYGGYNE EILASPIWDY  180
CPDSLWMIDE EDSKMILPMS DPFQSLFVQG STHITG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231479.11e-149PREDICTED: transcription factor MYB59-like
SwissprotQ9LX821e-42MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A166CXK91e-159A0A166CXK9_DAUCS; Uncharacterized protein
STRINGVIT_06s0004g04140.t012e-70(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.39e-42myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]