PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005379
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 339aa    MW: 38436.7 Da    PI: 4.7765
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005379genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.35.7e-27116177159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k+v++s+ed++v++it +g+H+++
  DCAR_005379 116 LDDGYSWRKYGQKDILGATFPRAYYRCTHRhtqGCLATKQVQQSDEDQSVFHITCKGRHTCN 177
                  59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182906.28E-25110178IPR003657WRKY domain
PROSITE profilePS5081120.771111179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-26112178IPR003657WRKY domain
SMARTSM007744.2E-38116178IPR003657WRKY domain
PfamPF031066.9E-25117176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAVDYTKQKA LINIELTQGR ELANQLKSYL DDHNTEKSGE ICEALLEKIL SSYEKSLAML  60
KSGATKCQEP KETPQCLSSD NPTSHTCDQS HQNAQKKRKA LPQWSKIAQV LTLTELDDGY  120
SWRKYGQKDI LGATFPRAYY RCTHRHTQGC LATKQVQQSD EDQSVFHITC KGRHTCNQTT  180
KSSNMPEKKS EKQKKEECIR EAGTENETMT LLFNCETSSL KTEKLEAVLE NFPSFSFPST  240
AVETPGMENY IFSSSLWEND SPTYISQEAS EPDYFSLSPC HLNEFGDSQH LPHSESDYME  300
MLSVPNSVSN SPVEDLEIVL DRAEFDPDFP FDLVEYFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-20105174374Disease resistance protein RRS1
5w3x_D5e-20105174374Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9271622e-35JF927162.1 Panax quinquefolius WRKY6 mRNA, complete cds.
GenBankKT2775472e-35KT277547.1 Panax ginseng WRKY6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232681.10.0PREDICTED: probable WRKY transcription factor 30
TrEMBLA0A166CZW40.0A0A166CZW4_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.19e-38WRKY DNA-binding protein 30