PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005491
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 102aa    MW: 12191.7 Da    PI: 10.0346
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005491genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.7e-115099147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                     r+ W+  E++ l  +v+++G g+Wk+I  +       Rt+ ++k++w++ 
      DCAR_005491 50 RKLWSNLEEDTLRAGVQKYGIGNWKLILDMYRdifDERTDGDLKDKWRNM 99
                     567********************************99***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-144499IPR009057Homeodomain-like
PROSITE profilePS5129413.34844101IPR017930Myb domain
SuperFamilySSF466892.94E-1547100IPR009057Homeodomain-like
SMARTSM007172.0E-449100IPR001005SANT/Myb domain
PfamPF002492.2E-95099IPR001005SANT/Myb domain
CDDcd116604.86E-1453100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MERNKTAWTY EWDESTDVSA DERRPHLSSH KTRLVTLEKH KNPKPSRRKR KLWSNLEEDT  60
LRAGVQKYGI GNWKLILDMY RDIFDERTDG DLKDKWRNMT A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215604.15e-63PREDICTED: telomeric repeat-binding factor 1-like
TrEMBLA0A166D3141e-67A0A166D314_DAUCS; Uncharacterized protein
STRINGXP_008241815.12e-29(Prunus mume)
STRINGXP_008366280.12e-29(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.13e-10telomere repeat binding factor 3