PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005550
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HSF
Protein Properties Length: 496aa    MW: 57840.4 Da    PI: 6.4703
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005550genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind691e-21631542103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++++e+isws  g+sf++ d+ +f+  +L +yF h+ ++ F+  L  YgFk+v++           +e+k+++F++g+k++l++ik
   DCAR_005550  63 FLRKMYEMVDDPDTNEIISWSVYGTSFFIRDKLNFKG-LLLQYFGHDTIKNFTNCLSAYGFKRVDSFL---------NEYKQEKFQRGQKHMLKHIK 149
                   9***********************************9.**************************9877.........67****************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   ++ s+
   DCAR_005550 150 KRPSK 154
                   *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-2161151IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.5E-2161151IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-1862151IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.3E-96386IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.5E-1963151IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-9100112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-9113125IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MESFLAQSSA DPNFIPRFIQ RLLEEEEVMR SNGSVSWSTS TMLPFLKPKL MQLKGFREIE  60
SPFLRKMYEM VDDPDTNEII SWSVYGTSFF IRDKLNFKGL LLQYFGHDTI KNFTNCLSAY  120
GFKRVDSFLN EYKQEKFQRG QKHMLKHIKK RPSKSDTMRN LLEDMVAEVK RLRDHQDIEI  180
KNEIFNLKQQ EEKRKNCLSS LKECLGHAKC KLIQIKESSD SRNRKEARPW LDPFKNIDKL  240
KMAMERMEVD IMDLESNHEA TAHYLTGLKG YFLTTESRQQ KMEVHMEKTL RIFGFDDEVR  300
KKPRAMKPRH QKLTRRRRPV SAASSVQSTC SQNTVLTYQP ETSTPLNSND IAWARELELD  360
MNIESGEHGL AIHHINEQNE TKPSETCLEN SNDMNMWARD LEDELASEAE IHETKIHVWT  420
EHPNAKFESY STGNCEHENK SATTLHNDMI KNSSTQAPDY QVQEQIKKEN FGASERNCDD  480
IDLWVSIVEG DVVFE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299317RKKPRAMKPRHQKLTRRRR
2299318RKKPRAMKPRHQKLTRRRRP
3300318KKPRAMKPRHQKLTRRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233276.10.0PREDICTED: uncharacterized protein LOC108207331
TrEMBLA0A162ARA50.0A0A162ARA5_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.11e-21heat shock transcription factor A9