PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_005559

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 447aa MW: 48344.6 Da PI: 6.5692

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_005559	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	2e-39	78	137	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk s DCAR_005559 78 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKYS 137 7899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	75	135	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.1E-32	80	135	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MSEHPSYSST TSAANNNTPD DDQSKAALNN ARSKPVPDDN QSTAPGDDHN KSAPDDDLCT 60 EEAQTEMGDS QEKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG 120 TMRNVPVGAG RRKNKYSASH YRQIAVSEAL QNAGVDIPNE IHSAGIKTNG TVLTFGSDSP 180 LCESLDSVLK INGKSLVNGS ENGFQKPGEF SPKVSCKAKN NSDDHPSGSS VIVSCSKNEI 240 VAPSLQNLAS QNGHSFSPVP YFPGEPWPYP WTVSQWNAPV TQVPPPGFCA VPMPFYPASP 300 YWGCNVPGLG PWNVQWVTPM SLSVNHPAAP SSSPSSPTLG KHLRDENMAN PSSCADEGSP 360 KENDPVKCLW VPKTLRINDP GEAAKSRIWE TLGIKNEITG NPDCGEGMFK AAFQSKDAEK 420 CDYKSSSVLH ANPAAMSRSQ SFHEST*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MSEHPSYSST TSAANNNTPD DDQSKAALNN ARSKPVPDDN QSTAPGDDHN KSAPDDDLCT  60
EEAQTEMGDS QEKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG  120
TMRNVPVGAG RRKNKYSASH YRQIAVSEAL QNAGVDIPNE IHSAGIKTNG TVLTFGSDSP  180
LCESLDSVLK INGKSLVNGS ENGFQKPGEF SPKVSCKAKN NSDDHPSGSS VIVSCSKNEI  240
VAPSLQNLAS QNGHSFSPVP YFPGEPWPYP WTVSQWNAPV TQVPPPGFCA VPMPFYPASP  300
YWGCNVPGLG PWNVQWVTPM SLSVNHPAAP SSSPSSPTLG KHLRDENMAN PSSCADEGSP  360
KENDPVKCLW VPKTLRINDP GEAAKSRIWE TLGIKNEITG NPDCGEGMFK AAFQSKDAEK  420
CDYKSSSVLH ANPAAMSRSQ SFHEST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017232802.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A166D4Q6	0.0	A0A166D4Q6_DAUCS; Uncharacterized protein
STRING	XP_006431167.1	1e-154	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-89	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	DCAR_005559