PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005574
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 307aa    MW: 34497.9 Da    PI: 4.7818
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005574genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.55.7e-28129188259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEE.S--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYe.geHnhe 59 
                   D ++WrKYGqK++kgs++prsYY+C+s+ gC ++k+ve+s +dp +++itY+  eHnh 
  DCAR_005574 129 ADCWAWRKYGQKPIKGSPYPRSYYKCSSSkGCLARKQVEQSCTDPGMFIITYNsAEHNHA 188
                  699************************998**********************7358***7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-27118190IPR003657WRKY domain
PROSITE profilePS5081128.403123190IPR003657WRKY domain
SuperFamilySSF1182905.89E-23127190IPR003657WRKY domain
SMARTSM007741.3E-31128189IPR003657WRKY domain
PfamPF031069.6E-23130187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGEFASMEED WGLEAIVRSF TDDHLMNMSS SFDDFLYDFP HLYEATSHDT NEDTLLSFDQ  60
IYEPAVEETA FSSEASFPSS SSCSSKGKDL EVEFEETETK KNARSNAVKY KKKKNQHKRV  120
VLQPEGQAAD CWAWRKYGQK PIKGSPYPRS YYKCSSSKGC LARKQVEQSC TDPGMFIITY  180
NSAEHNHAKP TRRSSLAGTN RHKFTALKTS SSDQDSSVTP PKDTPTASPT TPLWSSKMFH  240
QQPLKNEKDI DSVIDEKSGT SESSNENEYI VSDDIMLNDD FFVGLEDLDR LISESGFYSF  300
PSQTNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-18118191680Disease resistance protein RRS1
5w3x_D4e-18118191680Disease resistance protein RRS1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232433.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A161Y5W80.0A0A161Y5W8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-47WRKY family protein