PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005590
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 639aa    MW: 70885 Da    PI: 5.1918
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005590genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-13621233499
                  SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  k   led++g++W+v+l   +k+g+  + kGW +F  ++gL+eg ++vF+++ +s f  vv++++k
  DCAR_005590  62 KVYDLEDTNGQRWQVTL--GNKDGHLAFNKGWDKFYADHGLREGYSLVFHFMVKSHF--VVQIIDK 123
                  45789************..*******************************9977888..***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.71E-1529124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-1430124IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.5E-431124IPR003340B3 DNA binding domain
CDDcd100179.16E-1346122No hitNo description
PfamPF023621.1E-1062123IPR003340B3 DNA binding domain
PROSITE profilePS5086311.29366124IPR003340B3 DNA binding domain
Gene3DG3DSA:1.10.1820.101.7E-46497599IPR016149Casein kinase II, regulatory subunit, alpha-helical
SuperFamilySSF577981.57E-51500626IPR000704Casein kinase II, regulatory subunit
SMARTSM010853.3E-64502634IPR000704Casein kinase II, regulatory subunit
PRINTSPR004725.1E-39502518IPR000704Casein kinase II, regulatory subunit
PfamPF012148.2E-49502626IPR000704Casein kinase II, regulatory subunit
PRINTSPR004725.1E-39519533IPR000704Casein kinase II, regulatory subunit
PRINTSPR004725.1E-39574595IPR000704Casein kinase II, regulatory subunit
PRINTSPR004725.1E-39599620IPR000704Casein kinase II, regulatory subunit
Gene3DG3DSA:2.20.25.201.1E-8600626IPR016150Casein kinase II, regulatory subunit, beta-sheet
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005956Cellular Componentprotein kinase CK2 complex
GO:0003677Molecular FunctionDNA binding
GO:0019887Molecular Functionprotein kinase regulator activity
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MAGGEACDEC KSKCLLLHQR KKDPSPLITT FYKVLYGGYD YWKYLCLPQK ISQTIPVLGA  60
GKVYDLEDTN GQRWQVTLGN KDGHLAFNKG WDKFYADHGL REGYSLVFHF MVKSHFVVQI  120
IDKTGLEKRM FPLENGKKRK RSEIDVNSNA VGECQNHSNK QGSVFPGVPD SEARIHGQPM  180
SKNNSSSVKP GDGMYQHVAL GDSDIEQVFT INRDSGYKCE EGRSPILGFI NLEMRGVDPD  240
GSSDKRTHPS NTSAACNAAA RILDENPVSA KVVSGEPPAK VTAPTFFSNS NVSLKKENVA  300
EVGNDHLGDY QSGLGKQSAK VAAPTYCDNN NVYLKRENVA ELPAKATAPT FSNNNNLYLK  360
RENMAEVGND RHGDHQSVLP TGNRAQSHSE CRIKSSTTSL NRVQIEEVTG SKKHSKKYPK  420
FKERSDQIIG GDEKSNEIHK AVKAEPVDSY NDERLDASAL TFTVMVGSKE LLTDIAYACL  480
VEESETDSED SDVSGSDGED TSWISWFCNL RGNEFFCEVD DDYIQDDFNL CGLSSQVPYY  540
DYALDLILDV ESSHGDMFTE EQNELIESAA EMLYGLIHVR YILTTKGQAA MLEKYKNAEF  600
GRCPRVYCCG QPCLPVGQSD IPRHCTLEFG PENRSIED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rqf_A5e-524936225134Casein kinase II beta chain
1rqf_B5e-524936225134Casein kinase II beta chain
1rqf_D5e-524936225134Casein kinase II beta chain
1rqf_E5e-524936225134Casein kinase II beta chain
1rqf_G5e-524936225134Casein kinase II beta chain
1rqf_H5e-524936225134Casein kinase II beta chain
1rqf_J5e-524936225134Casein kinase II beta chain
1rqf_K5e-524936225134Casein kinase II beta chain
4md8_C6e-524966222128Casein kinase II subunit beta
4md8_D6e-524966222128Casein kinase II subunit beta
4md9_A6e-524966222128Casein kinase II subunit beta
4md9_B6e-524966222128Casein kinase II subunit beta
4md9_C6e-524966222128Casein kinase II subunit beta
4md9_D6e-524966222128Casein kinase II subunit beta
4md9_I6e-524966222128Casein kinase II subunit beta
4md9_J6e-524966222128Casein kinase II subunit beta
4md9_N6e-524966222128Casein kinase II subunit beta
4md9_O6e-524966222128Casein kinase II subunit beta
4nh1_C5e-524966222128Casein kinase II subunit beta
4nh1_D5e-524966222128Casein kinase II subunit beta
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232330.10.0PREDICTED: uncharacterized protein LOC108206517
RefseqXP_017232332.10.0PREDICTED: uncharacterized protein LOC108206517
RefseqXP_017232333.10.0PREDICTED: uncharacterized protein LOC108206517
RefseqXP_017232334.10.0PREDICTED: uncharacterized protein LOC108206517
TrEMBLA0A162ARD20.0A0A162ARD2_DAUCS; Casein kinase II subunit beta
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-06B3 family protein