PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005621
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LSD
Protein Properties Length: 78aa    MW: 8248.67 Da    PI: 6.1609
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005621genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.41.2e-132953125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 Cg+C+ lL+Y +GA+sV+Ca+C++V
  DCAR_005621 29 CGNCQMLLMYQYGARSVKCAVCQFV 53
                 ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.7E-122656IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-122953IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MPVPLAPYPL PPVPFAGPVN ANQVAQVNCG NCQMLLMYQY GARSVKCAVC QFVTSVGVSI  60
EFLSSLFGDQ IDKLVSQ*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785779.11e-19PREDICTED: protein LSD1-like, partial
RefseqXP_019241485.13e-19PREDICTED: protein LSD1-like
RefseqXP_023769510.11e-19protein LSD1-like
RefseqXP_023769511.11e-19protein LSD1-like
SwissprotQ93ZB12e-18LOL1_ARATH; Protein LOL1
TrEMBLA0A166D6A44e-48A0A166D6A4_DAUCS; Uncharacterized protein
STRINGXP_009785779.14e-19(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-20lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]