PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005631
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 589aa    MW: 64151.4 Da    PI: 5.661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005631genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11411456454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+r+N++f  Lr ++P+       K++Ka+ L   + YI++L
  DCAR_005631 411 NHVEAERQRRERLNQKFYALRVVVPNV-----SKMDKASLLGDSIMYINEL 456
                  799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-5236212IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.202407456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-17410482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.59E-12410461No hitNo description
Gene3DG3DSA:4.10.280.102.3E-18411478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8411456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-14413462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MTHYHPFPVA TTTTTLSTLD PFVSSTDTWA PAQESLQHGL QSLIENAKQP WTYAIFWQPT  60
SSVLGWADGY YQGDDKQKKS QPISAASAAE QQHRKEVLRS LNSLISGAEA SSSDDNGDEE  120
VTDTEWFFLI SMTQSFGSGS GLPGRAFQTN SFIWVSGGDR LMSCECDRAA QAQSFGLQTL  180
VCVPVGNGVV ELGSTDLIFR SSGLLNQVNI LFDSNGGQSG DWTLGLDHSE CDPSEGFVRE  240
VDLSKSKSVV VENHSSSTLT ENFNPSFSSA SHVQSQQFDR NQGGRSAVVI EEVNFSHSGI  300
DGISSTNVGN GCKGKSSEIL NFGESKTSNG NEFTGNSQFG GVVESKKRSR DDGMWSFSGV  360
KSSGGGVGDS DHSDLEPSML KEVESLQVVE PEKKPRKRGR KPANGREEPL NHVEAERQRR  420
ERLNQKFYAL RVVVPNVSKM DKASLLGDSI MYINELKSKV QAADSEKDEL RSQLETLRKQ  480
LSIKEAQCLV QSGPKKDSNL SKVHGSKLID LDIDVKIIGW DAMIRVQSSK KNHPAAKLMA  540
ALEDLDLDVI HASVSAVKDL TIQQATVKMG SRLYTQEQLR VALTARVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-55332156195Transcription factor MYC3
4rqw_B5e-55332156195Transcription factor MYC3
4rs9_A5e-55332156195Transcription factor MYC3
4yz6_A5e-55332156195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392400KKPRKRGRK
2416421RQRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-AACGTG-3') found in a number of promoters of jasmonate-induced genes (PubMed:15231736). Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:30518626). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). Acts synergistically with EOT1 in the transactivation of TPS5 (PubMed:24884371). Involved in type VI glandular trichome development (PubMed:30518626). Involved in the activation of terpene synthases required for volatile mono- and sesquiterpenes synthesis by the glandular cells of type VI trichomes (PubMed:30518626). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371, ECO:0000269|PubMed:30518626}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by methyl jasmonate and wounding. {ECO:0000269|PubMed:15231736}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236782.10.0PREDICTED: transcription factor MYC2-like
SwissprotA0A060KY900.0MYC1_SOLLC; Transcription factor MYC1
TrEMBLA0A169WJR50.0A0A169WJR5_DAUCS; Uncharacterized protein
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33002449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-154bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]
  3. Xu J, et al.
    SlMYC1 Regulates Type VI Glandular Trichome Formation and Terpene Biosynthesis in Tomato Glandular Cells.
    Plant Cell, 2018. 30(12): p. 2988-3005
    [PMID:30518626]