PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005640
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 398aa    MW: 43921.8 Da    PI: 6.6722
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005640genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.1e-31199257259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  DCAR_005640 199 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 257
                  699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.81193259IPR003657WRKY domain
SuperFamilySSF1182902.75E-26197259IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-30197259IPR003657WRKY domain
SMARTSM007741.4E-37198258IPR003657WRKY domain
PfamPF031067.9E-26200257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDNYQGELAD ILGSSSLIPS SQEPSHVTTA DMWQLSHSAM KKDHSLDDFG NPFCTLIKDP  60
LFEDLDIPIS NIFTAVSSNI IQQSPTTFPD DDKYSNKFQI SRDLSSSSDI SCANSSSLLK  120
PLAQNRELIC DNHVNHMMFS GISSGTSKPC NCFIENRRAQ ISSPQYTGIK RRKGQGKKVV  180
CIPAPAPVNS RPTGEIVPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR  240
TDPNMLVITY TSEHNHPWPT QRNALAGSTR NNPSKNSIIA SATKNAHGSN ETPKSPLPGL  300
KEEHKELMST NTVTVNNSSS EHVNIKGIHL EEKDTGTEAG DHYINHPDKD FFAELGEIEG  360
TDPLELMFTQ GFTGEESESH KALDPYGLYE WSGNSKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-25177260680Disease resistance protein RRS1
5w3x_D6e-25177260680Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234417.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A162ARH50.0A0A162ARH5_DAUCS; Uncharacterized protein
STRINGPOPTR_0011s16050.13e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.12e-69WRKY DNA-binding protein 14