PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_005646

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 149aa MW: 16698.1 Da PI: 10.5031

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_005646	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	111	133	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k++ s+Lk H + + DCAR_005646 111 FSCTRCHKRYAVLSDLKAHSKIC 133 89*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.36E-5	98	143	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	99	132	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MAASASASWK SGVRESADSS TSAFIRRRSY CRCCFYEKEP KSSRKSKTCN STEEGTICPG 60 SSRKRQIRRC RRRCTSAPKS VVRAHHDPAR ALGDLTGIKK HFSRKHGEKK FSCTRCHKRY 120 AVLSDLKAHS KICGTTEYKC ECGTTFYV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-12	107	146	3	42	Zinc finger protein JACKDAW
5b3h_F	2e-12	107	146	3	42	Zinc finger protein JACKDAW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233294.1	2e-35	PREDICTED: protein indeterminate-domain 9-like
TrEMBL	A0A161XFL2	1e-101	A0A161XFL2_DAUCS; Uncharacterized protein
STRING	Aquca_003_00800.1	4e-29	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	3e-32	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	DCAR_005646