PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005671
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HB-other
Protein Properties Length: 291aa    MW: 33095.1 Da    PI: 6.0037
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005671genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.3e-082392722154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp+++++++L +++gL+ +q+ +WF N+R +
  DCAR_005671 239 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 272
                  469*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.1E-182569IPR005540KNOX1
PfamPF037904.1E-162767IPR005540KNOX1
SMARTSM012569.9E-2383138IPR005541KNOX2
PfamPF037916.5E-1888137IPR005541KNOX2
PROSITE profilePS512138.573193213IPR005539ELK domain
PROSITE profilePS5007111.758213276IPR001356Homeobox domain
SMARTSM003894.7E-11215280IPR001356Homeobox domain
SuperFamilySSF466895.13E-16215279IPR009057Homeodomain-like
CDDcd000865.52E-11216277No hitNo description
Gene3DG3DSA:1.10.10.602.2E-25220278IPR009057Homeodomain-like
PfamPF059209.7E-18233272IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDEQVMGMMG SGGIGGLGDQ FSGEQQLKAE IANHPLYEQV LAAHVSCFRV ATPIDQLPII  60
DAQLAQSRQI LHSYLSQHNT NNHPLSANER QELDNFLAQY LLVLCSFKEQ LQQHVRVHAV  120
EAVMACRQIE QDLQALTGVS LDEGSGATMS DDDEDELQMD YSFDQSGSDA HDMMGFGLPT  180
ESERSLMERV RQELKIELKQ GFRSKIKDVR DEILRKRRAG KLPGDTTSVL KEWWQQHSKW  240
PYPTEDDKAK LVEETGLQLK QINNWFINQR KRNWHSNSNS TTSLKSKRKR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12216272864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269289RKRNWHSNSNSTTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231998.10.0PREDICTED: homeobox protein knotted-1-like 7
SwissprotQ9FPQ81e-153KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A169WLS80.0A0A169WLS8_DAUCS; Uncharacterized protein
STRINGEOY245901e-167(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-143KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]