PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005691
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 233aa    MW: 26064.3 Da    PI: 6.1602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005691genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18100150255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+++AeIrd + ng   r++lg+f+ ae Aa a+++a+ +++g
  DCAR_005691 100 SYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDDAEAAAMAYDQAAFSMRG 150
                  69*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.04E-1899159No hitNo description
SMARTSM003801.4E-36100164IPR001471AP2/ERF domain
PfamPF008471.7E-12100150IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22100160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-30100159IPR001471AP2/ERF domain
PROSITE profilePS5103222.853100158IPR001471AP2/ERF domain
PRINTSPR003679.5E-13101112IPR001471AP2/ERF domain
PRINTSPR003679.5E-13140160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGLSHDAAPT FKSFGVPHDS TDYSPESSFG SPSPRSWEDL DRFLEHGSLP FNFNDSEEML  60
LFGVLAEGAR ETSEANSCPR IKEEDVTSTA KITNPIKEKS YRGVRRRPWG KFAAEIRDST  120
RNGVRVWLGT FDDAEAAAMA YDQAAFSMRG SMAILNFPVE RVKESLKDMK YICEEGSSPV  180
VALKKRHTMR RKSLSRKSKA KETKMDNVVV LEDLGAEYLE QLLSSSESNF SW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2897159264ATERF1
3gcc_A9e-2897159264ATERF1
5wx9_A2e-271011601574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234033.11e-155PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y91e-74ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A169WMJ51e-171A0A169WMJ5_DAUCS; Uncharacterized protein
STRINGXP_010262305.13e-88(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-53ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]