PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005784
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 218aa    MW: 24556.4 Da    PI: 8.447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005784genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-1861109355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W+AeIrdp++     r++lg+f tae Aa+a+++ ++k++g
  DCAR_005784  61 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEAAARAYDKEARKIRG 109
                  9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.82860117IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2260118IPR016177DNA-binding domain
SMARTSM003804.0E-3860123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3260118IPR001471AP2/ERF domain
CDDcd000182.54E-3261118No hitNo description
PfamPF008473.8E-1161109IPR001471AP2/ERF domain
PRINTSPR003671.4E-116172IPR001471AP2/ERF domain
PRINTSPR003671.4E-118399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MCGGAIISDF IPPRSNTKYV SSSDIWPSSP LSPKRDHQPS HNISGGEELK KSVKRQRKNL  60
YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEAAARAY DKEARKIRGK KAKVNFPNED  120
VTNDCLVRPR SDPPSEFSTN DMAHNCENDH NKVGTGETRV MEEENQVQKL TEDLMAYESY  180
MKFYEIPYFN GSSVTVAAAA AAQENAEINL WSFDDVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21611191574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233881.11e-163PREDICTED: ethylene-responsive transcription factor ERF071
TrEMBLA0A161Y6D81e-162A0A161Y6D8_DAUCS; Uncharacterized protein
STRINGXP_010107742.14e-71(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.15e-46ERF family protein