PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_005817

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C3H

Protein Properties

Length: 77aa MW: 8363.22 Da PI: 6.493

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_005817	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	6.2e-12	46	70	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG C yG++C+++H++ DCAR_005817 46 VPNCAYYMRTGSCGYGNKCRYNHPR 70 799********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	4.6E-4	43	70	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.188	43	71	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-9	45	70	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-7	47	71	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.6E-6	49	70	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MELYGHSGNG SQTDQWAAPG QETGLEESMM RLGLLGGELY PERGGVPNCA YYMRTGSCGY 60 GNKCRYNHPR DRNSVS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017236101.1	4e-47	PREDICTED: zinc finger CCCH domain-containing protein 32-like
Swissprot	Q84W91	1e-23	C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBL	A0A166D9X7	5e-49	A0A166D9X7_DAUCS; Uncharacterized protein
STRING	XP_009776613.1	4e-27	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	3e-26	C3H family protein

Link Out ? help Back to Top
Phytozome	DCAR_005817