PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005963
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 699aa    MW: 77925.6 Da    PI: 9.6444
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005963genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.7e-08599648147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      DCAR_005963 599 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 648
                      678999********************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542369.13E-8408481IPR029071Ubiquitin-related domain
PROSITE profilePS500539.265413481IPR000626Ubiquitin domain
PROSITE profilePS5129415.459594653IPR017930Myb domain
SMARTSM007175.3E-8598651IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10599649IPR009057Homeodomain-like
CDDcd116607.43E-17600650No hitNo description
SuperFamilySSF466891.28E-15600681IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MLHKRLNHGL YGYEVPPIPR AARSARRRVP YRKKSDDDQM CAFDLLATVA GKLLEGENSP  60
SAAELLNGVD KSAVGADSLK KEKVVKDNPE KLIPCIEEKR GRNFFVSEII SQAPKHTIKE  120
VSHAQNDACS AFASVITTSD GSDMFGTAAK LVDDQSKNGR RNFSKLDMER CGSTISFSRL  180
DDENKNCIKI EPAMTGKEPC NARADTCCIK DLTVQDLEPH ALGNADNRCK FPVKPSVLDE  240
GLKKGICRDQ GPRGSFPTCK DNVKLVVRDG DENSSWCTTP RKLNKAFRPP ARMGDRRIKR  300
LLASRYWKAP PKLSNEDCFN IGLETKPVYQ NKANGYKRQR SLRDYPIKKR RLYGHSFETN  360
AYEMVNNNDT SFSPGKGYSE NASGSVPTMH EAKGVSTFAT SQQNCFQPRD SHVKLKIKSF  420
RVPELFFEIP ETATVGSLKR TVMEAVNSVL GGGLRVGVLF QGKKIRDDNK TLVQTGIYDN  480
NKNDSLGFTL EPLCSQVSPT QYPEDHALTP ARQITRCPHT GLIVKQGNSD VPPDLPSTNF  540
SNIIESDHDS APSPPDVSID KCLADSKALV ATPEMNVEPL SAISMRKSKR LDVGQRRIRR  600
PFSVSEVEAL VQAVEKLGTG RWRDVKMRAF DNAKHRTYVD LKDKWKTLVH TARISPQQRR  660
GEPVPQELLD RVLAAHAFWS QQQAKQQLKQ HSEACLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-555866894107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336351KRQRSLRDYPIKKRRL
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232104.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_017232106.10.0PREDICTED: telomere repeat-binding protein 5
SwissprotQ6R0E31e-129TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A166DDE40.0A0A166DDE4_DAUCS; Uncharacterized protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-116TRF-like 2