PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006004
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 237aa    MW: 27281.4 Da    PI: 6.0496
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006004genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-15855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l+ +v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
      DCAR_006004  8 KGPWTEHEDVQLAFYVNLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding55.21.6e-1761106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l v++  ++G++ W++Iar+++ gRt++++k++w++y+
      DCAR_006004  61 RGKMTPQEERLVVELQSKWGNR-WSRIARKLP-GRTDNEIKNYWRTYM 106
                      89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.139355IPR017930Myb domain
SuperFamilySSF466894.49E-286102IPR009057Homeodomain-like
SMARTSM007179.3E-13757IPR001005SANT/Myb domain
PfamPF002497.6E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-20962IPR009057Homeodomain-like
CDDcd001674.38E-91055No hitNo description
PROSITE profilePS5129426.46856110IPR017930Myb domain
SMARTSM007172.3E-1660108IPR001005SANT/Myb domain
PfamPF002492.0E-1561105IPR001005SANT/Myb domain
CDDcd001672.36E-1163106No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2263109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAQDEVRKGP WTEHEDVQLA FYVNLFGDRR WDFIAKVSGL KRTGKSCRLR WVNYLHPGLK  60
RGKMTPQEER LVVELQSKWG NRWSRIARKL PGRTDNEIKN YWRTYMRKEA QEKKKSMPSS  120
PSHSNCSSSI SSSSLDPAAD SKPIPNTMER NFFDTGGLDE GYSMDEIWND IDLSPEENVK  180
PVYGGFNDEI LASPIWDYCP DSLWSTDQED SKTILPTSEP YHSWFGQGSA FFTEHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2651101105MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-26511024128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236827.11e-178PREDICTED: transcription factor MYB59
SwissprotQ4JL842e-78MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A161Y6W51e-176A0A161Y6W5_DAUCS; Uncharacterized protein
STRINGVIT_06s0004g04140.t019e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.15e-75myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]