PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006054

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 298aa MW: 33733 Da PI: 9.29

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006054	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.5	1.1e-35	11	109	30	128
NAM 30 leevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmhey 126 + v++++++y+++PwdLp+k +e+ewyfF++rd+ky++g r+nr+++sg+Wkatg+dk++ls+ +++ +g+kk Lvfy+gr pkg+ktdW+m ey DCAR_006054 11 A-PVVADIELYNYNPWDLPNKSLFGEDEWYFFTPRDRKYPNGARPNRTAASGFWKATGTDKPILSAsGSRRIGVKKALVFYTGRPPKGVKTDWIMTEY 107 4.56999**********87778999*********************************9977888************************* PP NAM 127 rl 128 rl DCAR_006054 108 RL 109 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	46.639	1	136	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-47	2	136	IPR003441	NAC domain
Pfam	PF02365	3.7E-14	28	109	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MKRLRSCPLP APVVADIELY NYNPWDLPNK SLFGEDEWYF FTPRDRKYPN GARPNRTAAS 60 GFWKATGTDK PILSASGSRR IGVKKALVFY TGRPPKGVKT DWIMTEYRLP DTTTRPSRSK 120 GSMRLDDWVL CRIRQKGNNS KNSWTVEDDY NSSPPSRFVH TNYMPKIEEL PSAYIATNNT 180 PLDSYPFKDC QILKASMLSS QGLPDPVQTM TYNVNNSKFI TTSFFDDFLK PKFVNEIGSL 240 SGSNKTVTDV MSENDMGNMM STNTISFYNQ NQAQGNYFYN PTPSDAIMSL LLSHEGY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	13	142	48	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	13	142	48	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	13	142	48	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	13	142	48	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-55	13	142	48	171	NAC domain-containing protein 19
4dul_B	1e-55	13	142	48	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233417.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	K4BNG7	6e-62	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A161Y708	0.0	A0A161Y708_DAUCS; Uncharacterized protein
STRING	XP_002526377.1	4e-89	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13390	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	5e-64	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	DCAR_006054

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]