PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006072
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 724aa    MW: 79493 Da    PI: 7.3032
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006072genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-095525842254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  ++yp+ +++  LA+++gLt +qV++WF N R +
  DCAR_006072 552 HPYPTDTDKHMLATQTGLTRNQVSNWFINARVR 584
                  89*****************************87 PP
2BELL101.94.8e-33404472472
         BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e ++kk+kLl ++ee+++rY+qy++q+q+v+ sFe vagl +a+pY+s+Al++++rhFrcLk+ i+eq+
  DCAR_006072 404 EYHQKKTKLLCMQEELCRRYRQYHQQMQMVVTSFESVAGLSAAAPYISVALRTVTRHFRCLKQVISEQL 472
                  7899***************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-34305470IPR006563POX domain
PfamPF075267.5E-38310469IPR006563POX domain
PROSITE profilePS5007111.693525588IPR001356Homeobox domain
CDDcd000862.30E-11528589No hitNo description
SMARTSM003891.7E-8528592IPR001356Homeobox domain
SuperFamilySSF466891.03E-16530594IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-28531592IPR009057Homeodomain-like
PfamPF059207.5E-18545584IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MSYDPTCINS LDMVNYVSRN ESLVSADNVA VANLSHPISS NLNLSAAKQG DPQNCSNWKS  60
LGSHQSGDWN FNNYNRSNNN PTSISESSSS PLFTGEGRGS LKVNNISSPS FYWKQPSSYG  120
YNHDVVLQSS LVASPAPYNY QNTLQEVVTS AGAGPQGQDM VRYGGKDSNE LLLLPSYNEY  180
QVNQGRSCDG DLWVNRPMEV FRNQNGEDLA NKSIRALTGG EGSNTQGLSL SLSSVSQTNN  240
RREGQFGERN GLSDRPIDSK PFKSDYICSS SRPSVGNKVF GINRQNPGIT AIPHRDAAGP  300
LGPFTGYATI LKNSRYLNPT LQLMDELCRV SGSKQIETHE VYSGKNSDEV VVSAVDFAFN  360
VAHDSMVGSK GGNSGASSST FYSSNRIGGE AGVPSNANES YHPEYHQKKT KLLCMQEELC  420
RRYRQYHQQM QMVVTSFESV AGLSAAAPYI SVALRTVTRH FRCLKQVISE QLGHIGRTLG  480
EDLSSPTGGT TSSTKCDVST SGLKLIEHQK QKSCGSSMIF FEPQQPVWRP QRGLPERAVA  540
VLRAWLFDHF LHPYPTDTDK HMLATQTGLT RNQVSNWFIN ARVRVWKPMV EEIHVLETKG  600
STESSSQMGK PDGNTASEST NRYDTQTMNK LQGIDSSRSR EMTSADVWNQ EKRSRHECQI  660
PAGMDAGSLM SLLPYQRSEL EIGSGLGAVS LTLGLRQSAE SGQQQQDQYQ QHFGGHMIHD  720
FVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16534591158Homeobox protein Meis1
4xrs_B4e-16534591158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235851.10.0PREDICTED: uncharacterized protein LOC108209452
TrEMBLA0A161X2K70.0A0A161X2K7_DAUCS; Uncharacterized protein
STRINGVIT_06s0004g02580.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87202227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.18e-74BEL1-like homeodomain 8