PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006074
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 692aa    MW: 77060.3 Da    PI: 8.3599
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006074genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09442489347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +W+ eE ++lv++v ++G g W+ I +       +R++ ++k++w+++
      DCAR_006074 442 PWSHEEVLQLVNGVSKHGVGKWTDIKKVSFplsPHRSAVDLKDKWRNL 489
                      7************************997666999************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.289435494IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-12435493IPR009057Homeodomain-like
SuperFamilySSF466892.47E-15438500IPR009057Homeodomain-like
SMARTSM007179.6E-9439492IPR001005SANT/Myb domain
CDDcd116601.76E-19441491No hitNo description
PfamPF002493.9E-7442489IPR001005SANT/Myb domain
SuperFamilySSF506858.02E-16571691IPR009009RlpA-like protein, double-psi beta-barrel domain
Gene3DG3DSA:2.40.40.106.3E-11592691IPR009009RlpA-like protein, double-psi beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MSGPAFKKVL ENRQEECSSG TLVTAPNRMG TLKESSEVIV RGLHQVSGGG FYNLGSEDEA  60
VEHLLTELVP EYIDAVRNVL QFDAFGLYNC FGSGPLPLPD NRHPESAADK PNISNMLHEK  120
ATQKQKTTQL SIVKSEGNSE GHHTMSSTTN DLPDTYEDYL LDAEYLECGT DMNPVPSRGH  180
STENLHLDQQ CKDSSLSHCN VMYEGWCTSS KLVSEANENS FSPNKMTVDE RISVSSEEDM  240
ILTSASNPLT GVFNFRTKPR SRHMRRYRHT NSNYLKTFSV EDTCFSSSVP DMKEKVIVNV  300
VRGKYKPAQQ RYTSRSIAKS SRFSSRTCEY SAVSKDMIRP KKSVRQCPRE GLRPRVLIHG  360
SGKKNSEAAS TGVLSGVPLE QRSMEKGNEF EDSADSVSAG SDVDFNIGLC SVESQETSSE  420
GSFLSAAKTH KSNNSKRQRH IPWSHEEVLQ LVNGVSKHGV GKWTDIKKVS FPLSPHRSAV  480
DLKDKWRNLV RASCRFSERK KRVGKGKYWE TQYLPDDILH RVKELSCIYP YPRERNFKVS  540
QNPSGPCKPA GTLTCGKKKR TTYTTYSCSP PITASTPAVL TLNDFRKGGD GGAESSCDNK  600
FHENWELIVA LSTGWFDNSS RCFKKIRIRA SNGRSVEAKV VDECDSMHGC DKEHSYQRPC  660
DNNIVDGSSA VWNALGLNKD LGRVNINWSM V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4pmk_A7e-6153569137189Kiwellin
4pmk_B7e-6153569137189Kiwellin
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232756.10.0PREDICTED: uncharacterized protein LOC108206849 isoform X1
TrEMBLA0A161Y7260.0A0A161Y726_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.11e-17TRF-like 3