PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006128
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 206aa    MW: 22664.7 Da    PI: 8.1622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006128genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0016486123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C+k+Fs+   L  H  +H
  DCAR_006128 64 YECKTCKKCFSSFQALGGHRASH 86
                 99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.6796491IPR007087Zinc finger, C2H2
SuperFamilySSF576676.95E-86486No hitNo description
SMARTSM003550.336486IPR015880Zinc finger, C2H2-like
PfamPF139128.4E-106488IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576676.95E-8118145No hitNo description
PfamPF139121.7E-10122147IPR007087Zinc finger, C2H2
SMARTSM003550.31123145IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598123150IPR007087Zinc finger, C2H2
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRPIDGDHII RGKRTKRSRQ SSSSSSLESL REDEDLAKCL IMLARSGSLE KPNSRVEKAE  60
FCFYECKTCK KCFSSFQALG GHRASHKKPK TGDKHVGMTS DFEDVENAVS GVVSVGDVKA  120
KVHECLVCGS EFGSGQALGG HMRRHRSNNT TTTADSATKM MSIDGKVRNV LELDLNLPAP  180
EDQHMDSRFI FSYPCQAPTL IDCQY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234396.11e-152PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X45e-47ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A166DI641e-151A0A166DI64_DAUCS; Uncharacterized protein
STRINGAT2G28200.12e-45(Arabidopsis thaliana)
STRINGBostr.27991s0108.1.p2e-45(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-41C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]