PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006160

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 446aa MW: 49175.1 Da PI: 7.4176

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006160	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.6e-10	196	233	7	44
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 rr+++NReAAr+sR+RKka++++Le+ L++ ++ DCAR_006160 196 LRRLAQNREAARKSRLRKKAYVQQLETSRIRLSQLEQD 233 59************************876666665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.4E-4	189	253	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.554	192	236	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.25E-6	196	236	No hit	No description
Pfam	PF00170	4.3E-7	197	234	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-7	197	238	No hit	No description
PROSITE pattern	PS00036	0	197	212	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.9E-17	260	297	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MGSHRVGDTG LSNSGASNIH HYHHHIPYAV PHGLPPLNTN FINHQEGSAF DFGELEEAIV 60 LQNLKLNHDD SKLSFYTAKP AATLEMFPSW PMKLQQTPGG SSRSGGESTD SGLAVNTLSS 120 KAGGHLEPES PVSTKLSCDH QQAFDHNHLQ FPQENHHNHQ QQQLQAVEMA GDSPRSSSGP 180 SQTQPSSNTI LEKVTLRRLA QNREAARKSR LRKKAYVQQL ETSRIRLSQL EQDLQRARSQ 240 GLFLGGGSGG NAGSSMSPGV AAKSDVFHLI TGLWTTPAER CFLWMGGFRP SELIKTLIAQ 300 MDPLTEQQLV GIYSLQHSSQ QAEEALSQGL EQLQQSLIDT IANGSINDGM HHMAVALGKL 360 TNLEGFVRQA DNLRQQTLHQ LRRILTVRQA ARCFLIIGEY YARLRALSSL WASRPRESMM 420 SEENSCQPIT DMHMMQSSQN QYGSF*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MGSHRVGDTG LSNSGASNIH HYHHHIPYAV PHGLPPLNTN FINHQEGSAF DFGELEEAIV  60
LQNLKLNHDD SKLSFYTAKP AATLEMFPSW PMKLQQTPGG SSRSGGESTD SGLAVNTLSS  120
KAGGHLEPES PVSTKLSCDH QQAFDHNHLQ FPQENHHNHQ QQQLQAVEMA GDSPRSSSGP  180
SQTQPSSNTI LEKVTLRRLA QNREAARKSR LRKKAYVQQL ETSRIRLSQL EQDLQRARSQ  240
GLFLGGGSGG NAGSSMSPGV AAKSDVFHLI TGLWTTPAER CFLWMGGFRP SELIKTLIAQ  300
MDPLTEQQLV GIYSLQHSSQ QAEEALSQGL EQLQQSLIDT IANGSINDGM HHMAVALGKL  360
TNLEGFVRQA DNLRQQTLHQ LRRILTVRQA ARCFLIIGEY YARLRALSSL WASRPRESMM  420
SEENSCQPIT DMHMMQSSQN QYGSF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017232169.1	0.0	PREDICTED: transcription factor TGA2-like
Swissprot	Q93XM6	1e-155	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A162ASL7	0.0	A0A162ASL7_DAUCS; Uncharacterized protein
STRING	EOY33449	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	7e-90	bZIP family protein

Link Out ? help Back to Top
Phytozome	DCAR_006160

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]