PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006164
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YB
Protein Properties Length: 102aa    MW: 11136.9 Da    PI: 4.5113
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006164genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB37.94.3e-121299688
        NF-YB  6 rflPianvsrimkkvlPanak...is..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88
                 ++lP + v r++k +l + +k   is  kd+      cv  fi ++++ a+d c++ +r+ i+++d++ al ++ f + +eplk+ l+
  DCAR_006164 12 EELPKTIVRRLVKDTLSQCSKdgdISvlKDSLLAFSVCVRIFIQYLSATANDVCKEANRNIITANDVFKALEEIEFPELIEPLKASLE 99
                 57899999******99876663334433788888999***********************************************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.6E-81382IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.6E-231399IPR009072Histone-fold
SuperFamilySSF471137.43E-181499IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MANKTAPVAD PEELPKTIVR RLVKDTLSQC SKDGDISVLK DSLLAFSVCV RIFIQYLSAT  60
ANDVCKEANR NIITANDVFK ALEEIEFPEL IEPLKASLEG L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232924.11e-65PREDICTED: DNA polymerase epsilon subunit 3-like
TrEMBLA0A161Y7A54e-66A0A161Y7A5_DAUCS; Uncharacterized protein
STRINGSolyc11g068480.1.12e-42(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-26nuclear factor Y, subunit B11