PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006236
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 538aa    MW: 59645.4 Da    PI: 8.2814
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006236genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.4e-2342136189
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SSSE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgrse 89 
                  f+kvl +sdv++++rl++ kkfa ++         ++ + + + ++d + + W+++++++k+s++yv+t+GW++Fvka +L++gD+v+F+  +    +
  DCAR_006236  42 FKKVLAKSDVGRLSRLIILKKFAIQNfpsidvnAPIEDCVFHIDFYDARKNLWTFRYCFWKCSRSYVFTGGWNKFVKAYQLQAGDTVLFYknH---CG 136
                  89**************************9999866667999*************************************************322...33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-2936141IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-2240146No hitNo description
SuperFamilySSF1019368.5E-2540138IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.26542149IPR003340B3 DNA binding domain
SMARTSM010195.4E-1642144IPR003340B3 DNA binding domain
PfamPF023625.7E-2042137IPR003340B3 DNA binding domain
Gene3DG3DSA:1.10.3430.102.0E-4206241IPR029020Ammonium/urea transporter
SuperFamilySSF1113521.57E-66207505IPR024041Ammonium transporter AmtB-like domain
Gene3DG3DSA:1.10.3430.108.3E-74242505IPR029020Ammonium/urea transporter
PfamPF009093.2E-57242523IPR024041Ammonium transporter AmtB-like domain
PROSITE patternPS012190261286IPR018047Ammonium transporter, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0072488Biological Processammonium transmembrane transport
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0008519Molecular Functionammonium transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MMCNTSLNCN ARLSPPHKRQ RLEKDAVIAI HDGEYHAREF LFKKVLAKSD VGRLSRLIIL  60
KKFAIQNFPS IDVNAPIEDC VFHIDFYDAR KNLWTFRYCF WKCSRSYVFT GGWNKFVKAY  120
QLQAGDTVLF YKNHCGDESF FGIEVRYAGA RNIVGSLANN LYNGEEFMND DTVRVKKEHE  180
VSASQLKEKD VMLFGVRIKR ASKDFQATMV GLQSVPGLII LYGGAVKKKW AVNSAFMALY  240
AFASFSIWSL EGWLALKGII DYSGGYVIHL SSGVAGFTAA YWVGPRLTKD RERFPPNNII  300
LMLAGAGLLW MGWTGFNGGD PYSVSTDASL AVLNTHICAA TSLLTWLFLD IIFFRKASVI  360
GAVQGMITGL VCITPAAGVV EGWAAIIMGI CSGSIPWFTM MVVHKRSELL QRVDDTMAVF  420
HTHAIAGCLG GILTGLFAKP SLCNLFYAKY AHYVGLFYGF REGRVHAGFR QIGIQLLGIL  480
FVVVVNVVVT SLVCLLVQLI FPLRMSDEDM EVGDDAIHGE EAYAIWGDGE KLDAASY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5aex_A5e-39247523172444AMMONIUM TRANSPORTER MEP2
5aex_B5e-39247523172444AMMONIUM TRANSPORTER MEP2
5aex_C5e-39247523172444AMMONIUM TRANSPORTER MEP2
5aex_D5e-39247523172444AMMONIUM TRANSPORTER MEP2
5aex_E5e-39247523172444AMMONIUM TRANSPORTER MEP2
5aex_F5e-39247523172444AMMONIUM TRANSPORTER MEP2
5aex_H5e-39247523172444AMMONIUM TRANSPORTER MEP2
5aex_I5e-39247523172444AMMONIUM TRANSPORTER MEP2
5aex_J5e-39247523172444AMMONIUM TRANSPORTER MEP2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in ammonium transport. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1492218e-45FJ149221.1 Daucus carota subsp. sativus clone BAC C121C04 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234680.10.0PREDICTED: ammonium transporter 3 member 1-like
SwissprotQ84KJ61e-139AMT31_ORYSJ; Ammonium transporter 3 member 1
TrEMBLA0A166DLL90.0A0A166DLL9_DAUCS; Uncharacterized protein
STRINGXP_002515551.11e-173(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.18e-23RAV family protein
Publications ? help Back to Top
  1. Suenaga A, et al.
    Constitutive expression of a novel-type ammonium transporter OsAMT2 in rice plants.
    Plant Cell Physiol., 2003. 44(2): p. 206-11
    [PMID:12610225]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Pérez-Tienda J,Corrêa A,Azcón-Aguilar C,Ferrol N
    Transcriptional regulation of host NH₄⁺ transporters and GS/GOGAT pathway in arbuscular mycorrhizal rice roots.
    Plant Physiol. Biochem., 2014. 75: p. 1-8
    [PMID:24361504]