PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006320
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YB
Protein Properties Length: 141aa    MW: 14837.9 Da    PI: 5.8564
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006320genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB70.62.6e-221801796
        NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96
                 m++++P+++ is da ++vq+cv +fi +vt+e+  +c +    t++++d+l al +lGf +y+ pl +yl++++e++++
  DCAR_006320  1 MRRIIPNQGEISADAVKSVQQCVIKFIRYVTAETKTRCGEGMSTTMTAQDVLIALNKLGFGHYIGPLFAYLNRFQEFQAK 80
                 89**************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.44E-16182IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.0E-20181IPR009072Histone-fold
PfamPF008082.9E-8155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MRRIIPNQGE ISADAVKSVQ QCVIKFIRYV TAETKTRCGE GMSTTMTAQD VLIALNKLGF  60
GHYIGPLFAY LNRFQEFQAK QGPSGEPLVI RRTLQPGGMG IAASFAPGFE VEGLMAMGGF  120
MGDGQNDAPS GSAADSTGDA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A6e-211762297NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2737202e-73AB273720.1 Daucus carota gene for CCAAT-box binding factor HAP3 homolog, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233480.12e-99PREDICTED: nuclear transcription factor Y subunit B-9-like
TrEMBLA0A162AT083e-98A0A162AT08_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.16e-25NF-YB family protein