PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006324

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YB

Protein Properties

Length: 144aa MW: 16377.7 Da PI: 7.1957

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006324	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	81.7	9.5e-26	23	116	4	97
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 + ++P nv+ +m++++ +++ is da ++q+cv +fi +vt+ea+ +c + r t++++d+l al +lGf++y+ pl +y+++++e+++e+ DCAR_006324 23 SNDLVPAPNVTGLMRRIILNQGEISADAVISIQQCVIKFIRYVTAEANARCGEGMRTTMTAHDVLIALNKLGFHHYIGPLFIYMNRFQEFQAEQ 116 57789************************************************************************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-23	16	116	IPR009072	Histone-fold
SuperFamily	SSF47113	3.35E-20	27	117	IPR009072	Histone-fold
Pfam	PF00808	1.3E-10	27	90	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MKRTHEEREN FECHENSSEQ RISNDLVPAP NVTGLMRRII LNQGEISADA VISIQQCVIK 60 FIRYVTAEAN ARCGEGMRTT MTAHDVLIAL NKLGFHHYIG PLFIYMNRFQ EFQAEQGDPP 120 VIRRHYSSPE VWGLVHQVLT LKG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-23	21	111	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233482.1	1e-105	PREDICTED: nuclear transcription factor Y subunit B-9-like
TrEMBL	A0A161Y7M8	1e-104	A0A161Y7M8_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	3e-26	NF-YB family protein

Link Out ? help Back to Top
Phytozome	DCAR_006324