PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006325
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YB
Protein Properties Length: 254aa    MW: 27941.3 Da    PI: 4.3818
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006325genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB80.22.7e-2526115796
        NF-YB   7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                  ++P  nv+ +m++++P+++ is da  ++q+cv +fi +vt+ea+ +c +  r t++++d+l al +lGf++y+ pl +y+++ +e++ e
  DCAR_006325  26 LVPAPNVTGLMRRIIPNQGEISADAVISIQQCVIKFIRYVTAEANARCCEGMRTTMTAHDVLIALNKLGFHHYIGPLFIYMNRLQEFQPE 115
                  57999*******************************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.19E-2027116IPR009072Histone-fold
PfamPF008089.1E-112790IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.5E-2227115IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKRTHEEREN FECYGNSSEQ IISYDLVPAP NVTGLMRRII PNQGEISADA VISIQQCVIK  60
FIRYVTAEAN ARCCEGMRTT MTAHDVLIAL NKLGFHHYIG PLFIYMNRLQ EFQPEQGDPL  120
VIRRTLFQPR GMGIGGPGFD VEGVMTMGGF VGDDQNDAPS GSAAHSTADA VISIQQCVIE  180
FIRYVTAETK TSGSTIVGVG SPDPPQFVYD DEEYQDVFLS EASFITREPN QWYREPYASS  240
AGADSTADFA QSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A3e-22261111297NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233483.11e-124PREDICTED: transcriptional activator hap3-like
TrEMBLA0A166DNZ00.0A0A166DNZ0_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.15e-25NF-YB family protein