PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006326

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YB

Protein Properties

Length: 171aa MW: 18809.2 Da PI: 5.5536

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006326	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	82.4	5.8e-26	26	115	7	96
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 ++P nv+ +m++++P+++ is d+ ++q+cv +fi +vt+ea+ +c + r ti+++d+l al +lGf++y+ pl +y+++ +e++ e DCAR_006326 26 LVPAPNVTGLMRRIIPNQGEISADSVISIQQCVIKFIRYVTAEANTRCGEGMRTTITAHDVLIALNKLGFHHYIGPLFIYMNRLQEFQPE 115 68999********************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-23	18	115	IPR009072	Histone-fold
SuperFamily	SSF47113	4.19E-21	27	116	IPR009072	Histone-fold
Pfam	PF00808	1.0E-11	27	90	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MKRTHEEREN FECHENSSEQ RISYDLVPAP NVTGLMRRII PNQGEISADS VISIQQCVIK 60 FIRYVTAEAN TRCGEGMRTT ITAHDVLIAL NKLGFHHYIG PLFIYMNRLQ EFQPEQGDPL 120 VIRRTLFQPR GMGIGGPGFD VEGVMTMGGF VGDDQNDAPS GSAAHSTGDA *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-24	26	111	12	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233484.1	1e-125	PREDICTED: nuclear transcription factor Y subunit B-6-like
TrEMBL	A0A166DNZ8	1e-124	A0A166DNZ8_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	6e-27	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	DCAR_006326